RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 ADAMTS3O15072 1205 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 POLR2DO15514 142 aaKnown RBP11.21□□□□□ -0.61
USP39-214ENST00000474572 ZRSR1Q15695 479 aaKnown RBP11.21□□□□□ -0.61
USP39-214ENST00000474572 DOK7Q18PE1 504 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 SPECC1Q5M775 1068 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 DACT2Q5SW24 774 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 STRIP1Q5VSL9 837 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 ARL6IP4Q66PJ3 421 aaKnown RBP11.21□□□□□ -0.61
USP39-214ENST00000474572 CC2D2BQ6DHV5 1058 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 CDC42EP5Q6NZY7 148 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 C4orf32Q8N8J7 132 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 SPC24Q8NBT2 197 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 TEKT1Q969V4 418 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 ZMYND12Q9H0C1 365 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 TMX4Q9H1E5 349 aaPredicted RBP11.21□□□□□ -0.61
USP39-214ENST00000474572 HSD3B7Q9H2F3 369 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 RIOX1Q9H6W3 641 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 MTMR4Q9NYA4 1195 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 STX8Q9UNK0 236 aa11.21□□□□□ -0.61
USP39-214ENST00000474572 A0A087X0B3 334 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 KLRF2D3W0D1 207 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 H0YIN7 160 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 BIN1O00499 593 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 FOXN1O15353 648 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PARP1P09874 1014 aaKnown RBP11.2□□□□□ -0.62
USP39-214ENST00000474572 PRR29P0C7W0 189 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PDHBP11177 359 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 BMP6P22004 513 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PTGS1P23219 599 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 SHMT1P34896 483 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 CRKP46108 304 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 TPM4P67936 248 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PTGDRQ13258 359 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 MORC3Q14149 939 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 E2F4Q16254 413 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 CCDC144BQ3MJ40 725 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 CT47A1Q5JQC4 288 aaPredicted RBP11.2□□□□□ -0.62
USP39-214ENST00000474572 MSL1Q68DK7 614 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PIK3AP1Q6ZUJ8 805 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 USP49Q70CQ1 688 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 CCDC186Q7Z3E2 898 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 GPKOWQ92917 476 aaPredicted RBP eCLIP11.2□□□□□ -0.62
USP39-214ENST00000474572 CNKSR1Q969H4 720 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PYM1Q9BRP8 204 aaKnown RBP11.2□□□□□ -0.62
USP39-214ENST00000474572 IDI2Q9BXS1 227 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 USP40Q9NVE5 1235 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 CLIP2Q9UDT6 1046 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 RGS17Q9UGC6 210 aaPredicted RBP11.2□□□□□ -0.62
USP39-214ENST00000474572 MAN1B1Q9UKM7 699 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 PYCARDQ9ULZ3 195 aa11.2□□□□□ -0.62
USP39-214ENST00000474572 BAZ2BQ9UIF8 2168 aaKnown RBP11.2□□□□□ -0.62
USP39-214ENST00000474572 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.19□□□□□ -0.62
USP39-214ENST00000474572 NEMFO60524 1076 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 SLFN14P0C7P3 912 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 AKR1B1P15121 316 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 ATP2B1P20020 1258 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 MYL5Q02045 173 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 ORC2Q13416 577 aaPredicted RBP11.19□□□□□ -0.62
USP39-214ENST00000474572 NOLC1Q14978 699 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP39-214ENST00000474572 ZNF174Q15697 407 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 ASPRV1Q53RT3 343 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 MLKLQ8NB16 471 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 CCDC12Q8WUD4 166 aaPredicted RBP11.19□□□□□ -0.62
USP39-214ENST00000474572 SYMPKQ92797 1274 aaKnown RBP11.19□□□□□ -0.62
USP39-214ENST00000474572 ZNF622Q969S3 477 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP39-214ENST00000474572 MXD3Q9BW11 206 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 IMPACTQ9P2X3 320 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 NRBP1Q9UHY1 535 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 SERPINB13Q9UIV8 391 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 PCDHA6Q9UN73 950 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 PCDHA8Q9Y5H6 950 aa11.19□□□□□ -0.62
USP39-214ENST00000474572 ATRNL1Q5VV63 1379 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 LAD1O00515 517 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 ECE2O60344 883 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 HLA-DOAP06340 250 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 LONP1P36776 959 aaKnown RBP11.18□□□□□ -0.62
USP39-214ENST00000474572 PRPHP41219 470 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 PICALMQ13492 652 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 EZH2Q15910 746 aaKnown RBP11.18□□□□□ -0.62
USP39-214ENST00000474572 IL17AQ16552 155 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 PPP4R3BQ5MIZ7 849 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 USP17L2Q6R6M4 530 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 RASGRP2Q7LDG7 609 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 KRT25Q7Z3Z0 450 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 CACTINQ8WUQ7 758 aaKnown RBP11.18□□□□□ -0.62
USP39-214ENST00000474572 SMARCE1Q969G3 411 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 CCDC34Q96HJ3 373 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 EPSTI1Q96J88 318 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 CCDC17Q96LX7 622 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 DHX36Q9H2U1 1008 aaKnown RBP11.18□□□□□ -0.62
USP39-214ENST00000474572 DBNDD1Q9H9R9 158 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 STK32BQ9NY57 414 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 DACH1Q9UI36 760 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 SERPINA10Q9UK55 444 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 EP400Q96L91 3159 aa11.18□□□□□ -0.62
USP39-214ENST00000474572 F8W031 263 aaPredicted RBP11.17□□□□□ -0.62
USP39-214ENST00000474572 GOLGA8HP0CJ92 632 aa11.17□□□□□ -0.62
USP39-214ENST00000474572 SCNN1DP51172 638 aa11.17□□□□□ -0.62
USP39-214ENST00000474572 GSDMDP57764 484 aa11.17□□□□□ -0.62
USP39-214ENST00000474572 ZNF543Q08ER8 600 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms