RNA–Protein interactions for RNA: ENST00000472789.1

SMARCD3-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 863 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-208ENST00000472789 NUP88Q99567 741 aaPredicted RBP12.38□□□□□ -0.43
SMARCD3-208ENST00000472789 ZSWIM6Q9HCJ5 1215 aa12.38□□□□□ -0.43
SMARCD3-208ENST00000472789 HPS5Q9UPZ3 1129 aa12.38□□□□□ -0.43
SMARCD3-208ENST00000472789 LAMA4Q16363 1823 aa12.38□□□□□ -0.43
SMARCD3-208ENST00000472789 F5H6K3 240 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 WDR46O15213 610 aaKnown RBP12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 FLOT1O75955 427 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 NDUFB10O96000 172 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 HOXA7P31268 230 aaPredicted RBP12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 FGD1P98174 961 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 SP3Q02447 781 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 KLRC3Q07444 240 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 KIF22Q14807 665 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 CCDC178Q5BJE1 867 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 FAM83BQ5T0W9 1011 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 SLFN13Q68D06 897 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 CATSPERGQ6ZRH7 1159 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 STOX1Q6ZVD7 989 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 ANKRD13CQ8N6S4 541 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 ZSCAN10Q96SZ4 725 aaPredicted RBP12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 P2RX7Q99572 595 aaKnown RBP12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 PAGR1Q9BTK6 254 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 CFHR5Q9BXR6 569 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 TCP11L1Q9NUJ3 509 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 ZSWIM5Q9P217 1185 aa12.37□□□□□ -0.43
SMARCD3-208ENST00000472789 LOC285556D6RIA3 1793 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 ERICH2A1L162 156 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 HSP90AA1P07900 732 aaKnown RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 TOP1P11387 765 aaKnown RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 HERVK_113P62684 666 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 IKQ13123 557 aaPredicted RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 SART3Q15020 963 aaKnown RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 CCDC96Q2M329 555 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 CYB5R4Q7L1T6 521 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 DHX32Q7L7V1 743 aaKnown RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 CHST3Q7LGC8 479 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 MKL1Q969V6 931 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 TMEM47Q9BQJ4 181 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 ALDH8A1Q9H2A2 487 aaPredicted RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 KAT14Q9H8E8 782 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 PDRG1Q9NUG6 133 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 GREB1LQ9C091 1923 aaPredicted RBP12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 TNKSO95271 1327 aa12.36□□□□□ -0.43
SMARCD3-208ENST00000472789 K7ELQ4 463 aaPredicted RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 IFIT3O14879 490 aaKnown RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 RPS6KB1P23443 525 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 MCM5P33992 734 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 SLC1A4P43007 532 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 GCLCP48506 637 aaPredicted RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 COG2Q14746 738 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 C17orf99Q6UX52 265 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 CCAR1Q8IX12 1150 aaKnown RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 GMCL1P1Q8NEA9 526 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 CD99L2Q8TCZ2 262 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 ERO1AQ96HE7 468 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 ZSCAN31Q96LW9 406 aaPredicted RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 TTC14Q96N46 770 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 UPF3BQ9BZI7 483 aaKnown RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 SYNPO2Q9UMS6 1093 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 CTDP1Q9Y5B0 961 aaPredicted RBP12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 MYH4Q9Y623 1939 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 ADGRA2Q96PE1 1338 aa12.35□□□□□ -0.43
SMARCD3-208ENST00000472789 SPDYE16A6NNV3 312 aaPredicted RBP12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 PRC1O43663 620 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 PEX10O60683 326 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 BMP3P12645 472 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 ADCK5Q3MIX3 580 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 TMEM67Q5HYA8 995 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 IFIT1BQ5T764 474 aaKnown RBP12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 RASGRP2Q7LDG7 609 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 DGKHQ86XP1 1220 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 ENAHQ8N8S7 591 aaPredicted RBP12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 GTF3C2Q8WUA4 911 aaPredicted RBP12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 MTA3Q9BTC8 594 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 CWC22Q9HCG8 908 aaKnown RBP12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 FBXO28Q9NVF7 368 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 HOXC10Q9NYD6 342 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 SZT2Q5T011 3432 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 WDR19Q8NEZ3 1342 aa12.34□□□□□ -0.43
SMARCD3-208ENST00000472789 TMEM232C9JQI7 657 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 FMNL1O95466 1100 aaPredicted RBP12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 BCRP11274 1271 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 DSG3P32926 999 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 SLC4A3P48751 1232 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 LACTBP83111 547 aaPredicted RBP12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 PLS1Q14651 629 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 WTAPQ15007 396 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 ARHGEF6Q15052 776 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 PKN2Q16513 984 aaKnown RBP12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 FAM110CQ1W6H9 321 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 NOM1Q5C9Z4 860 aaKnown RBP12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 WDR78Q5VTH9 848 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 RCSD1Q6JBY9 416 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 NFXL1Q6ZNB6 911 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 KCTD1Q719H9 257 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 MB21D2Q8IYB1 491 aaPredicted RBP12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 PNMA1Q8ND90 353 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 GPRC5AQ8NFJ5 357 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 KIFC2Q96AC6 838 aa12.33□□□□□ -0.44
SMARCD3-208ENST00000472789 ATG4CQ96DT6 458 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms