RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 TRIM43Q96BQ3 446 aaPredicted RBP11.37□□□□□ -0.59
VCL-204ENST00000472585 MS4A3Q96HJ5 214 aa11.37□□□□□ -0.59
VCL-204ENST00000472585 FEZ1Q99689 392 aa11.37□□□□□ -0.59
VCL-204ENST00000472585 PCDHB13Q9Y5F0 798 aa11.37□□□□□ -0.59
VCL-204ENST00000472585 IPO8O15397 1037 aaKnown RBP11.36□□□□□ -0.59
VCL-204ENST00000472585 CLTBP09497 229 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 CYP2D6P10635 497 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 ADORA2AP29274 412 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 USP14P54578 494 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 EPHB4P54760 987 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 TLE2Q04725 743 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 FPGSQ05932 587 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 SNX17Q15036 470 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 SLFNL1Q499Z3 407 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 CLEC10AQ8IUN9 316 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 TIFAQ96CG3 184 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 C1QTNF1Q9BXJ1 281 aa11.36□□□□□ -0.59
VCL-204ENST00000472585 FOCADQ5VW36 1801 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 SEPT4O43236 478 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 IGSF3O75054 1194 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 ERCC3P19447 782 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 OS9Q13438 667 aaPredicted RBP11.35□□□□□ -0.59
VCL-204ENST00000472585 COG2Q14746 738 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 C1orf53Q5VUE5 145 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 OLFML2BQ68BL8 750 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 CCDC129Q6ZRS4 1044 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 SLC44A5Q8NCS7 719 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 DYNLL2Q96FJ2 89 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 SPATC1LQ9H0A9 340 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 PLXNA1Q9UIW2 1896 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 TCF20Q9UGU0 1960 aaKnown RBP11.35□□□□□ -0.59
VCL-204ENST00000472585 SMCHD1A6NHR9 2005 aa11.35□□□□□ -0.59
VCL-204ENST00000472585 CHGBP05060 677 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 TAL1P17542 331 aaPredicted RBP11.34□□□□□ -0.59
VCL-204ENST00000472585 LRRC41Q15345 812 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 CCDC85BQ15834 202 aaPredicted RBP11.34□□□□□ -0.59
VCL-204ENST00000472585 FAM47AQ5JRC9 791 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 AKNAD1Q5T1N1 836 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 TTC6Q86TZ1 520 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 CABP5Q9NP86 173 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 TMEM39AQ9NV64 488 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 SLC5A4Q9NY91 659 aa11.34□□□□□ -0.59
VCL-204ENST00000472585 TCRBV5S4A2TA0A5A2 114 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 PRKAB2O43741 272 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 STRNO43815 780 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 PQBP1O60828 265 aaKnown RBP11.33□□□□□ -0.6
VCL-204ENST00000472585 IGFBP4P22692 258 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 ZKSCAN2Q63HK3 967 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 CCDC174Q6PII3 467 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 SDR42E1Q8WUS8 393 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 ATG4CQ96DT6 458 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 MAML3Q96JK9 1138 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 PRDM12Q9H4Q4 367 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 DCP1AQ9NPI6 582 aaPredicted RBP11.33□□□□□ -0.6
VCL-204ENST00000472585 HOXC10Q9NYD6 342 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 EXOC6BQ9Y2D4 811 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 HCN4Q9Y3Q4 1203 aa11.33□□□□□ -0.6
VCL-204ENST00000472585 CYP2D7A0A087X1C5 515 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 KIAA0355O15063 1070 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 POLR3DP05423 398 aaPredicted RBP11.32□□□□□ -0.6
VCL-204ENST00000472585 AKR1B1P15121 316 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 PDE6AP16499 860 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 TMEM132BQ14DG7 1078 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 CEP85Q6P2H3 762 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 RNF180Q86T96 592 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 SPICE1Q8N0Z3 855 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 LCORLQ8N3X6 602 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 SHCBP1Q8NEM2 672 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 FBXO28Q9NVF7 368 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 MCM9Q9NXL9 1143 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 ADAMTS5Q9UNA0 930 aa11.32□□□□□ -0.6
VCL-204ENST00000472585 ZNFX1Q9P2E3 1918 aaKnown RBP11.32□□□□□ -0.6
VCL-204ENST00000472585 MYH1P12882 1939 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 MAGEB6P1A0A0J9YX57 407 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 DCDC2CA8MYV0 355 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 MPHOSPH10O00566 681 aaKnown RBP11.31□□□□□ -0.6
VCL-204ENST00000472585 PGK1P00558 417 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 PGK2P07205 417 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 RARBP10826 455 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
VCL-204ENST00000472585 SLC9C2Q5TAH2 1124 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 AACSQ86V21 672 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 NCAPG2Q86XI2 1143 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 LENG1Q96BZ8 264 aaPredicted RBP11.31□□□□□ -0.6
VCL-204ENST00000472585 TANGO6Q9C0B7 1094 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 IL1RAPL2Q9NP60 686 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 XPNPEP3Q9NQH7 507 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 PHF24Q9UPV7 400 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 TMX2Q9Y320 296 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 ZNF532Q9HCE3 1301 aa11.31□□□□□ -0.6
VCL-204ENST00000472585 ZNF236Q9UL36 1845 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 PIEZO1Q92508 2521 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 ZNF865P0CJ78 1059 aaPredicted RBP11.3□□□□□ -0.6
VCL-204ENST00000472585 PLS1Q14651 629 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 ZNF792Q3KQV3 632 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 CERS3Q8IU89 383 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 ABRAQ8N0Z2 381 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 REPS2Q8NFH8 660 aa11.3□□□□□ -0.6
VCL-204ENST00000472585 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.3□□□□□ -0.62e-11■□□□□ 8.4
VCL-204ENST00000472585 PBX4Q9BYU1 374 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms