RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 PBX2P40425 430 aa22.36■■□□□ 1.17
SHH-205ENST00000472308 CLUAP1Q96AJ1 413 aa22.36■■□□□ 1.17
SHH-205ENST00000472308 TOX2Q96NM4 488 aa22.36■■□□□ 1.17
SHH-205ENST00000472308 TINF2Q9BSI4 451 aa22.36■■□□□ 1.17
SHH-205ENST00000472308 TBX21Q9UL17 535 aa22.36■■□□□ 1.17
SHH-205ENST00000472308 BCAR3O75815 825 aa22.35■■□□□ 1.17
SHH-205ENST00000472308 MAP3K12Q12852 859 aa22.35■■□□□ 1.17
SHH-205ENST00000472308 ZNF792Q3KQV3 632 aa22.35■■□□□ 1.17
SHH-205ENST00000472308 TMEM179Q6ZVK1 233 aa22.35■■□□□ 1.17
SHH-205ENST00000472308 C16orf59Q7L2K0 433 aa22.35■■□□□ 1.17
SHH-205ENST00000472308 ATXN2LQ8WWM7 1075 aaKnown RBP22.35■■□□□ 1.17
SHH-205ENST00000472308 PBX4Q9BYU1 374 aa22.35■■□□□ 1.17
SHH-205ENST00000472308 NOP58Q9Y2X3 529 aaKnown RBP22.35■■□□□ 1.17
SHH-205ENST00000472308 ZNFX1Q9P2E3 1918 aaKnown RBP22.34■■□□□ 1.17
SHH-205ENST00000472308 CYP2D6P10635 497 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 ACLYP53396 1101 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 ATP8B2P98198 1209 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 RASIP1Q5U651 963 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 TMED8Q6PL24 325 aaPredicted RBP22.34■■□□□ 1.17
SHH-205ENST00000472308 PPM1EQ8WY54 764 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 ASB2Q96Q27 587 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 MMP19Q99542 508 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 MCM9Q9NXL9 1143 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 ADAMTS5Q9UNA0 930 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 TMX2Q9Y320 296 aa22.34■■□□□ 1.17
SHH-205ENST00000472308 SYNRGQ9UMZ2 1314 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 GRXCR1A8MXD5 290 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 SLC25A27O95847 323 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 TIMP1P01033 207 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 AKR1A1P14550 325 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 AKNAD1Q5T1N1 836 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 CCSAPQ6IQ19 270 aaPredicted RBP22.33■■□□□ 1.17
SHH-205ENST00000472308 TMEM57Q8N5G2 664 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 ADAMTS19Q8TE59 1207 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 TSEN34Q9BSV6 310 aaKnown RBP22.33■■□□□ 1.17
SHH-205ENST00000472308 PRDM12Q9H4Q4 367 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 C1orf115Q9H7X2 142 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 VCPKMTQ9H867 229 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 STARD7Q9NQZ5 370 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 THEGQ9P2T0 379 aa22.33■■□□□ 1.17
SHH-205ENST00000472308 DIS3Q9Y2L1 958 aaKnown RBP22.33■■□□□ 1.17
SHH-205ENST00000472308 COL11A1P12107 1806 aaPredicted RBP22.33■■□□□ 1.16
SHH-205ENST00000472308 PLXNA1Q9UIW2 1896 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 NCOR1O75376 2440 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 MAGEB6P1A0A0J9YX57 407 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 ZNF316A6NFI3 1004 aaPredicted RBP22.32■■□□□ 1.16
SHH-205ENST00000472308 DCDC2CA8MYV0 355 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 IPO8O15397 1037 aaKnown RBP22.32■■□□□ 1.16
SHH-205ENST00000472308 ADGRE1Q14246 886 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 TMEM240Q5SV17 173 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 SAMD1Q6SPF0 538 aaPredicted RBP22.32■■□□□ 1.16
SHH-205ENST00000472308 RIOX2Q8IUF8 465 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 KLHDC9Q8NEP7 349 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 FRAT1Q92837 279 aaPredicted RBP22.32■■□□□ 1.16
SHH-205ENST00000472308 FBXO28Q9NVF7 368 aa22.32■■□□□ 1.16
SHH-205ENST00000472308 WDR46O15213 610 aaKnown RBP22.31■■□□□ 1.16
SHH-205ENST00000472308 AKR1B1P15121 316 aa22.31■■□□□ 1.16
SHH-205ENST00000472308 ICA1Q05084 483 aa22.31■■□□□ 1.16
SHH-205ENST00000472308 MFSD5Q6N075 450 aa22.31■■□□□ 1.16
SHH-205ENST00000472308 SDR42E1Q8WUS8 393 aa22.31■■□□□ 1.16
SHH-205ENST00000472308 DYNLL2Q96FJ2 89 aa22.31■■□□□ 1.16
SHH-205ENST00000472308 GAS2L1Q99501 681 aaPredicted RBP22.31■■□□□ 1.16
SHH-205ENST00000472308 CRNKL1Q9BZJ0 848 aaKnown RBP22.31■■□□□ 1.16
SHH-205ENST00000472308 DCP1AQ9NPI6 582 aaPredicted RBP22.31■■□□□ 1.16
SHH-205ENST00000472308 MYADML2A6NDP7 307 aa22.3■■□□□ 1.16
SHH-205ENST00000472308 PDE6AP16499 860 aa22.3■■□□□ 1.16
SHH-205ENST00000472308 PLA2G5P39877 138 aa22.3■■□□□ 1.16
SHH-205ENST00000472308 KCTD2Q14681 263 aa22.3■■□□□ 1.16
SHH-205ENST00000472308 ARHGEF10LQ9HCE6 1279 aa22.3■■□□□ 1.16
SHH-205ENST00000472308 ZNF214Q9UL59 606 aaPredicted RBP22.3■■□□□ 1.16
SHH-205ENST00000472308 MOXD2PA6NHM9 499 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 SMIM22K7EJ46 135 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 IRX5P78411 483 aaPredicted RBP22.29■■□□□ 1.16
SHH-205ENST00000472308 KCNA10Q16322 511 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 LCORLQ8N3X6 602 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 REPS2Q8NFH8 660 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 NUP133Q8WUM0 1156 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 SWAP70Q9UH65 585 aa22.29■■□□□ 1.16
SHH-205ENST00000472308 VWA5AO00534 786 aa22.28■■□□□ 1.16
SHH-205ENST00000472308 CSF2RAP15509 400 aa22.28■■□□□ 1.16
SHH-205ENST00000472308 CDK7P50613 346 aa22.28■■□□□ 1.16
SHH-205ENST00000472308 CCDC129Q6ZRS4 1044 aa22.28■■□□□ 1.16
SHH-205ENST00000472308 UHRF1Q96T88 793 aaPredicted RBP22.28■■□□□ 1.16
SHH-205ENST00000472308 SH2D4AQ9H788 454 aa22.28■■□□□ 1.16
SHH-205ENST00000472308 CNPY2Q9Y2B0 182 aa22.28■■□□□ 1.16
SHH-205ENST00000472308 TCRBV5S4A2TA0A5A2 114 aa22.27■■□□□ 1.16
SHH-205ENST00000472308 SNAI1O95863 264 aaPredicted RBP22.27■■□□□ 1.16
SHH-205ENST00000472308 STAT3P40763 770 aa22.27■■□□□ 1.16
SHH-205ENST00000472308 MRPS5P82675 430 aaKnown RBP22.27■■□□□ 1.16
SHH-205ENST00000472308 PPIGQ13427 754 aaKnown RBP eCLIP22.27■■□□□ 1.16
SHH-205ENST00000472308 SLC9C2Q5TAH2 1124 aa22.27■■□□□ 1.16
SHH-205ENST00000472308 ADCY6O43306 1168 aa22.26■■□□□ 1.15
SHH-205ENST00000472308 ACRP10323 421 aa22.26■■□□□ 1.15
SHH-205ENST00000472308 CCDC85BQ15834 202 aaPredicted RBP22.26■■□□□ 1.15
SHH-205ENST00000472308 ZNF365Q70YC5 407 aa22.26■■□□□ 1.15
SHH-205ENST00000472308 PPP1R9AQ9ULJ8 1098 aa22.26■■□□□ 1.15
SHH-205ENST00000472308 ELP1O95163 1332 aa22.26■■□□□ 1.15
SHH-205ENST00000472308 ZNF532Q9HCE3 1301 aa22.26■■□□□ 1.15
SHH-205ENST00000472308 CST5P28325 142 aaPredicted RBP22.25■■□□□ 1.15
SHH-205ENST00000472308 MSL3Q8N5Y2 521 aaKnown RBP22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms