RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 REPS2Q8NFH8 660 aa24.77■■□□□ 1.56
COL6A1-203ENST00000466285 UBE2OQ9C0C9 1292 aaKnown RBP24.77■■□□□ 1.56
COL6A1-203ENST00000466285 ECHDC1Q9NTX5 307 aa24.77■■□□□ 1.56
COL6A1-203ENST00000466285 ROBO3Q96MS0 1386 aa24.77■■□□□ 1.56
COL6A1-203ENST00000466285 M0R2C6 588 aa24.76■■□□□ 1.55
COL6A1-203ENST00000466285 PGK2P07205 417 aa24.76■■□□□ 1.55
COL6A1-203ENST00000466285 RASA1P20936 1047 aa24.76■■□□□ 1.55
COL6A1-203ENST00000466285 OTUD7AQ8TE49 926 aaPredicted RBP24.76■■□□□ 1.55
COL6A1-203ENST00000466285 LENG1Q96BZ8 264 aaPredicted RBP24.76■■□□□ 1.55
COL6A1-203ENST00000466285 MAML3Q96JK9 1138 aa24.76■■□□□ 1.55
COL6A1-203ENST00000466285 CCDC17Q96LX7 622 aa24.76■■□□□ 1.55
COL6A1-203ENST00000466285 ADAMTS5Q9UNA0 930 aa24.76■■□□□ 1.55
COL6A1-203ENST00000466285 MCM3APO60318 1980 aa24.75■■□□□ 1.55
COL6A1-203ENST00000466285 DNM1LO00429 736 aa24.75■■□□□ 1.55
COL6A1-203ENST00000466285 FAM47AQ5JRC9 791 aa24.75■■□□□ 1.55
COL6A1-203ENST00000466285 MB21D1Q8N884 522 aa24.75■■□□□ 1.55
COL6A1-203ENST00000466285 RTP1P59025 263 aa24.74■■□□□ 1.55
COL6A1-203ENST00000466285 LRIT3Q3SXY7 679 aa24.74■■□□□ 1.55
COL6A1-203ENST00000466285 KBTBD3Q8NAB2 608 aa24.74■■□□□ 1.55
COL6A1-203ENST00000466285 MROH8Q9H579 483 aa24.74■■□□□ 1.55
COL6A1-203ENST00000466285 SH2D4AQ9H788 454 aa24.74■■□□□ 1.55
COL6A1-203ENST00000466285 ARPP21Q9UBL0 812 aaPredicted RBP24.74■■□□□ 1.55
COL6A1-203ENST00000466285 ZNF214Q9UL59 606 aaPredicted RBP24.74■■□□□ 1.55
COL6A1-203ENST00000466285 RAD21O60216 631 aa24.73■■□□□ 1.55
COL6A1-203ENST00000466285 TAL1P17542 331 aaPredicted RBP24.73■■□□□ 1.55
COL6A1-203ENST00000466285 PPP1R9AQ9ULJ8 1098 aa24.73■■□□□ 1.55
COL6A1-203ENST00000466285 VWA5AO00534 786 aa24.72■■□□□ 1.55
COL6A1-203ENST00000466285 STRNO43815 780 aa24.72■■□□□ 1.55
COL6A1-203ENST00000466285 MSCO60682 206 aa24.72■■□□□ 1.55
COL6A1-203ENST00000466285 SEC62Q99442 399 aaKnown RBP24.72■■□□□ 1.55
COL6A1-203ENST00000466285 DCTPP1Q9H773 170 aa24.72■■□□□ 1.55
COL6A1-203ENST00000466285 KANSL2Q9H9L4 492 aa24.72■■□□□ 1.55
COL6A1-203ENST00000466285 SEPT4O43236 478 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 PRDM1O75626 825 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 MYCNP04198 464 aaPredicted RBP24.71■■□□□ 1.55
COL6A1-203ENST00000466285 RIOX2Q8IUF8 465 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 AMOTL1Q8IY63 956 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 ABRAQ8N0Z2 381 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 DEFB123Q8N688 67 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 APPBP2Q92624 585 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 ATP11BQ9Y2G3 1177 aa24.71■■□□□ 1.55
COL6A1-203ENST00000466285 IGKV6D-41A0A0C4DH26 115 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 MINDY4BA8MYZ0 360 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 GPAA1O43292 621 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 SBK1Q52WX2 424 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 ZSCAN25Q6NSZ9 544 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 FERMT2Q96AC1 680 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 MMP19Q99542 508 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 CHMP4BQ9H444 224 aaKnown RBP24.7■■□□□ 1.54
COL6A1-203ENST00000466285 RIPK3Q9Y572 518 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 PCDHB15Q9Y5E8 787 aa24.7■■□□□ 1.54
COL6A1-203ENST00000466285 EYSQ5T1H1 3165 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 NDUFB10O96000 172 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 FCER1AP12319 257 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 LRRC41Q15345 812 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 ZNF792Q3KQV3 632 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 TRIM60Q495X7 471 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 DDRGK1Q96HY6 314 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 GOPCQ9HD26 462 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 LRRC37A2A6NM11 1700 aa24.69■■□□□ 1.54
COL6A1-203ENST00000466285 RNF113AO15541 343 aaKnown RBP24.68■■□□□ 1.54
COL6A1-203ENST00000466285 ADCYAP1R1P41586 468 aa24.68■■□□□ 1.54
COL6A1-203ENST00000466285 SH3RF1Q7Z6J0 888 aa24.68■■□□□ 1.54
COL6A1-203ENST00000466285 PI4K2BQ8TCG2 481 aa24.68■■□□□ 1.54
COL6A1-203ENST00000466285 UNC80Q8N2C7 3258 aa24.67■■□□□ 1.54
COL6A1-203ENST00000466285 STAT3P40763 770 aa24.67■■□□□ 1.54
COL6A1-203ENST00000466285 SNX17Q15036 470 aa24.67■■□□□ 1.54
COL6A1-203ENST00000466285 SLC39A5Q6ZMH5 540 aa24.67■■□□□ 1.54
COL6A1-203ENST00000466285 CDH23Q9H251 3354 aa24.67■■□□□ 1.54
COL6A1-203ENST00000466285 KBTBD13C9JR72 458 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 FOXP2O15409 715 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 SLC25A27O95847 323 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 RASGRP2Q7LDG7 609 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 LRRC47Q8N1G4 583 aaKnown RBP24.66■■□□□ 1.54
COL6A1-203ENST00000466285 SLF1Q9BQI6 1058 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 PDLIM7Q9NR12 457 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 MTMR10Q9NXD2 777 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 LCTP09848 1927 aa24.66■■□□□ 1.54
COL6A1-203ENST00000466285 A0A0C4DFX4 3053 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 F5H6K3 240 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 PGK1P00558 417 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 ZNF865P0CJ78 1059 aaPredicted RBP24.65■■□□□ 1.54
COL6A1-203ENST00000466285 IRX5P78411 483 aaPredicted RBP24.65■■□□□ 1.54
COL6A1-203ENST00000466285 KLRC3Q07444 240 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 CEP95Q96GE4 821 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 FGD4Q96M96 766 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 TINF2Q9BSI4 451 aa24.65■■□□□ 1.54
COL6A1-203ENST00000466285 PRDM5Q9NQX1 630 aaPredicted RBP24.65■■□□□ 1.54
COL6A1-203ENST00000466285 ITGB8P26012 769 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 TDO2P48775 406 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 C9orf50Q5SZB4 431 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 SNRNP48Q6IEG0 339 aaKnown RBP24.64■■□□□ 1.54
COL6A1-203ENST00000466285 GPR153Q6NV75 609 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 ARRDC4Q8NCT1 418 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 MKNK2Q9HBH9 465 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 NYAP2Q9P242 653 aa24.64■■□□□ 1.54
COL6A1-203ENST00000466285 TRIM43BA6NCK2 446 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 ADCY6O43306 1168 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 KCTD2Q14681 263 aa24.63■■□□□ 1.53
COL6A1-203ENST00000466285 GIMAP6Q6P9H5 292 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms