RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 FEM1BQ9UK73 627 aa23.22■■□□□ 1.31
COL9A3-204ENST00000463487 PSMA5P28066 241 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 IKQ13123 557 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-204ENST00000463487 WTAPQ15007 396 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 CCDC96Q2M329 555 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 TMEM67Q5HYA8 995 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 RCSD1Q6JBY9 416 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 LBX2Q6XYB7 198 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 ANKRD13CQ8N6S4 541 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 PNMA1Q8ND90 353 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 KCNB2Q92953 911 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 MTMR7Q9Y216 660 aa23.21■■□□□ 1.31
COL9A3-204ENST00000463487 PRC1O43663 620 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 BCRP11274 1271 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 STAT2P52630 851 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 FAM160B2Q86V87 743 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 TMTC2Q8N394 836 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 CHURC1Q8WUH1 139 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 NUP88Q99567 741 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-204ENST00000463487 SLF1Q9BQI6 1058 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 RABGAP1Q9Y3P9 1069 aa23.2■■□□□ 1.3
COL9A3-204ENST00000463487 CTDP1Q9Y5B0 961 aaPredicted RBP23.2■■□□□ 1.3
COL9A3-204ENST00000463487 WDR19Q8NEZ3 1342 aa23.19■■□□□ 1.3
COL9A3-204ENST00000463487 SPDYE16A6NNV3 312 aaPredicted RBP23.19■■□□□ 1.3
COL9A3-204ENST00000463487 DSG3P32926 999 aa23.19■■□□□ 1.3
COL9A3-204ENST00000463487 SAMD1Q6SPF0 538 aaPredicted RBP23.19■■□□□ 1.3
COL9A3-204ENST00000463487 CCAR1Q8IX12 1150 aaKnown RBP23.19■■□□□ 1.3
COL9A3-204ENST00000463487 PRPF38AQ8NAV1 312 aaKnown RBP23.19■■□□□ 1.3
COL9A3-204ENST00000463487 GPRC5AQ8NFJ5 357 aa23.19■■□□□ 1.3
COL9A3-204ENST00000463487 NKX2-3Q8TAU0 364 aa23.19■■□□□ 1.3
COL9A3-204ENST00000463487 PAGR1Q9BTK6 254 aa23.19■■□□□ 1.3
COL9A3-204ENST00000463487 MORF4L1Q9UBU8 362 aa23.19■■□□□ 1.3
COL9A3-204ENST00000463487 CCNA1P78396 465 aa23.18■■□□□ 1.3
COL9A3-204ENST00000463487 LACTBP83111 547 aaPredicted RBP23.18■■□□□ 1.3
COL9A3-204ENST00000463487 SEC23AQ15436 765 aa23.18■■□□□ 1.3
COL9A3-204ENST00000463487 GPATCH4Q5T3I0 446 aaKnown RBP23.18■■□□□ 1.3
COL9A3-204ENST00000463487 DHX32Q7L7V1 743 aaKnown RBP23.18■■□□□ 1.3
COL9A3-204ENST00000463487 CHST3Q7LGC8 479 aa23.18■■□□□ 1.3
COL9A3-204ENST00000463487 RASEFQ8IZ41 740 aa23.18■■□□□ 1.3
COL9A3-204ENST00000463487 PPP1R9AQ9ULJ8 1098 aa23.18■■□□□ 1.3
COL9A3-204ENST00000463487 SNX14Q9Y5W7 946 aa23.18■■□□□ 1.3
COL9A3-204ENST00000463487 TMEM232C9JQI7 657 aa23.17■■□□□ 1.3
COL9A3-204ENST00000463487 GNRH1P01148 92 aa23.17■■□□□ 1.3
COL9A3-204ENST00000463487 FDX1P10109 184 aa23.17■■□□□ 1.3
COL9A3-204ENST00000463487 FCGRTP55899 365 aa23.17■■□□□ 1.3
COL9A3-204ENST00000463487 BLOC1S2Q6QNY1 142 aa23.17■■□□□ 1.3
COL9A3-204ENST00000463487 CATIPQ7Z7H3 387 aa23.17■■□□□ 1.3
COL9A3-204ENST00000463487 JAKMIP1Q96N16 626 aaKnown RBP23.17■■□□□ 1.3
COL9A3-204ENST00000463487 PLA2G6O60733 806 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 PDHBP11177 359 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 ANTXR2P58335 489 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 ERVK-9P63128 1117 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 ERVK-24P63145 666 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 FGD1P98174 961 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 ASPRV1Q53RT3 343 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 NFXL1Q6ZNB6 911 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 CD99L2Q8TCZ2 262 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 KIFC2Q96AC6 838 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 CWC22Q9HCG8 908 aaKnown RBP23.16■■□□□ 1.3
COL9A3-204ENST00000463487 FBXO28Q9NVF7 368 aa23.16■■□□□ 1.3
COL9A3-204ENST00000463487 CASP8AP2Q9UKL3 1982 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 CCDC69A6NI79 296 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 ZBED4O75132 1171 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 HOXD10P28358 340 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 ADCK5Q3MIX3 580 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 C8orf34Q49A92 452 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 KCTD1Q719H9 257 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 IGDCC4Q8TDY8 1250 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 ATG4CQ96DT6 458 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 UPF2Q9HAU5 1272 aaKnown RBP23.15■■□□□ 1.3
COL9A3-204ENST00000463487 RBPJLQ9UBG7 517 aa23.15■■□□□ 1.3
COL9A3-204ENST00000463487 FMNL1O95466 1100 aaPredicted RBP23.14■■□□□ 1.29
COL9A3-204ENST00000463487 SNHG28P0DPA3 235 aa23.14■■□□□ 1.29
COL9A3-204ENST00000463487 LIFRP42702 1097 aa23.14■■□□□ 1.29
COL9A3-204ENST00000463487 ANAPC15P60006 121 aa23.14■■□□□ 1.29
COL9A3-204ENST00000463487 ZNF543Q08ER8 600 aa23.14■■□□□ 1.29
COL9A3-204ENST00000463487 CTU1Q7Z7A3 348 aaKnown RBP23.14■■□□□ 1.29
COL9A3-204ENST00000463487 EFCC1Q9HA90 598 aa23.14■■□□□ 1.29
COL9A3-204ENST00000463487 VWA5AO00534 786 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 SH2B2O14492 632 aaPredicted RBP23.13■■□□□ 1.29
COL9A3-204ENST00000463487 PARP1P09874 1014 aaKnown RBP23.13■■□□□ 1.29
COL9A3-204ENST00000463487 CASTP20810 708 aaKnown RBP23.13■■□□□ 1.29
COL9A3-204ENST00000463487 MAPK4P31152 587 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 PSMC4P43686 418 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 PKN2Q16513 984 aaKnown RBP23.13■■□□□ 1.29
COL9A3-204ENST00000463487 SYNE3Q6ZMZ3 975 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 CHMP4CQ96CF2 233 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 LY9Q9HBG7 655 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 TXNRD2Q9NNW7 524 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 ADAMTS5Q9UNA0 930 aa23.13■■□□□ 1.29
COL9A3-204ENST00000463487 FRMPD2Q68DX3 1309 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-204ENST00000463487 TNPO2O14787 897 aaKnown RBP23.12■■□□□ 1.29
COL9A3-204ENST00000463487 DDAH1O94760 285 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 CALM1P0DP23 149 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 CALM2P0DP24 149 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 CALM3P0DP25 149 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 COPB2P35606 906 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 PLS1Q14651 629 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 COA7Q96BR5 231 aa23.12■■□□□ 1.29
COL9A3-204ENST00000463487 TM6SF1Q9BZW5 370 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 176.5 ms