RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PARP14Q460N5 1801 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 SEPT4O43236 478 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 PRAMEF19Q5SWL8 479 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 Q7L0L9 218 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 KBTBD3Q8NAB2 608 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 MAML3Q96JK9 1138 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 SLC5A4Q9NY91 659 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 ADAMTS5Q9UNA0 930 aa19.32■□□□□ 0.68
COL7A1-204ENST00000462475 GSG1L2A8MUP6 293 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 RAD21O60216 631 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 FCER1AP12319 257 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 RTP1P59025 263 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 FAM83BQ5T0W9 1011 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 GPR153Q6NV75 609 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 STK11IPQ8N1F8 1099 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 OSBP2Q969R2 916 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 GOPCQ9HD26 462 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 PPP1R9AQ9ULJ8 1098 aa19.31■□□□□ 0.68
COL7A1-204ENST00000462475 LAMA2P24043 3122 aaKnown RBP19.31■□□□□ 0.68
COL7A1-204ENST00000462475 VWA5AO00534 786 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 SLC25A27O95847 323 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 PGK2P07205 417 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 RASA1P20936 1047 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 RIOX2Q8IUF8 465 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 DEFB123Q8N688 67 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 ARRDC4Q8NCT1 418 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 REPS2Q8NFH8 660 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 APPBP2Q92624 585 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 MMP19Q99542 508 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 DCTPP1Q9H773 170 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 EPB41L4AQ9HCS5 686 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-204ENST00000462475 ZNF214Q9UL59 606 aaPredicted RBP19.3■□□□□ 0.68
COL7A1-204ENST00000462475 ROBO3Q96MS0 1386 aa19.3■□□□□ 0.68
COL7A1-204ENST00000462475 GREB1LQ9C091 1923 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-204ENST00000462475 KBTBD13C9JR72 458 aa19.29■□□□□ 0.68
COL7A1-204ENST00000462475 MYCNP04198 464 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-204ENST00000462475 SBK1Q52WX2 424 aa19.29■□□□□ 0.68
COL7A1-204ENST00000462475 FAM47AQ5JRC9 791 aa19.29■□□□□ 0.68
COL7A1-204ENST00000462475 NUP88Q99567 741 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-204ENST00000462475 MINDY4BA8MYZ0 360 aa19.28■□□□□ 0.68
COL7A1-204ENST00000462475 STAT3P40763 770 aa19.28■□□□□ 0.68
COL7A1-204ENST00000462475 GIMAP6Q6P9H5 292 aa19.28■□□□□ 0.68
COL7A1-204ENST00000462475 GPATCH3Q96I76 525 aa19.28■□□□□ 0.68
COL7A1-204ENST00000462475 LBHD1Q9BQE6 289 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-204ENST00000462475 ATP11BQ9Y2G3 1177 aa19.28■□□□□ 0.68
COL7A1-204ENST00000462475 COL11A1P12107 1806 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-204ENST00000462475 M0R2C6 588 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 RNF113AO15541 343 aaKnown RBP19.27■□□□□ 0.68
COL7A1-204ENST00000462475 GPAA1O43292 621 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 KCTD2Q14681 263 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 LRRC41Q15345 812 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 ZNF792Q3KQV3 632 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 SLC39A5Q6ZMH5 540 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 MKNK2Q9HBH9 465 aa19.27■□□□□ 0.68
COL7A1-204ENST00000462475 NDUFB10O96000 172 aa19.26■□□□□ 0.67
COL7A1-204ENST00000462475 TAL1P17542 331 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-204ENST00000462475 SLC17A8Q8NDX2 589 aa19.26■□□□□ 0.67
COL7A1-204ENST00000462475 SLF1Q9BQI6 1058 aa19.26■□□□□ 0.67
COL7A1-204ENST00000462475 NYAP2Q9P242 653 aa19.26■□□□□ 0.67
COL7A1-204ENST00000462475 PRKAG2Q9UGJ0 569 aa19.26■□□□□ 0.67
COL7A1-204ENST00000462475 A0A0C4DFX4 3053 aa19.26■□□□□ 0.67
COL7A1-204ENST00000462475 IGKV6D-41A0A0C4DH26 115 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 F5H6K3 240 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 PRDM1O75626 825 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 ZFYP08048 801 aaPredicted RBP19.25■□□□□ 0.67
COL7A1-204ENST00000462475 ADCYAP1R1P41586 468 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 TDO2P48775 406 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 KLRC3Q07444 240 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 SNX17Q15036 470 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 TRIM60Q495X7 471 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 FERMT2Q96AC1 680 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 TINF2Q9BSI4 451 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 NRBP1Q9UHY1 535 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 LTBP2Q14767 1821 aa19.25■□□□□ 0.67
COL7A1-204ENST00000462475 COPB2P35606 906 aa19.24■□□□□ 0.67
COL7A1-204ENST00000462475 SNRNP48Q6IEG0 339 aaKnown RBP19.24■□□□□ 0.67
COL7A1-204ENST00000462475 LENG1Q96BZ8 264 aaPredicted RBP19.24■□□□□ 0.67
COL7A1-204ENST00000462475 TEX13BQ9BXU2 312 aa19.24■□□□□ 0.67
COL7A1-204ENST00000462475 XPNPEP3Q9NQH7 507 aa19.24■□□□□ 0.67
COL7A1-204ENST00000462475 PRDM5Q9NQX1 630 aaPredicted RBP19.24■□□□□ 0.67
COL7A1-204ENST00000462475 MTMR10Q9NXD2 777 aa19.24■□□□□ 0.67
COL7A1-204ENST00000462475 DIS3Q9Y2L1 958 aaKnown RBP19.24■□□□□ 0.67
COL7A1-204ENST00000462475 RIPK3Q9Y572 518 aa19.24■□□□□ 0.67
COL7A1-204ENST00000462475 ZNF865P0CJ78 1059 aaPredicted RBP19.23■□□□□ 0.67
COL7A1-204ENST00000462475 RARBP10826 455 aa19.23■□□□□ 0.67
COL7A1-204ENST00000462475 GNAT2P19087 354 aa19.23■□□□□ 0.67
COL7A1-204ENST00000462475 OTUD7AQ8TE49 926 aaPredicted RBP19.23■□□□□ 0.67
COL7A1-204ENST00000462475 SEC62Q99442 399 aaKnown RBP19.23■□□□□ 0.67
COL7A1-204ENST00000462475 PDLIM7Q9NR12 457 aa19.23■□□□□ 0.67
COL7A1-204ENST00000462475 CLIP2Q9UDT6 1046 aa19.23■□□□□ 0.67
COL7A1-204ENST00000462475 PGK1P00558 417 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 APPP05067 770 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 SH3RF1Q7Z6J0 888 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 PI4K2BQ8TCG2 481 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 CEP95Q96GE4 821 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 PHF24Q9UPV7 400 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 STXBP5LQ9Y2K9 1186 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 PCDHB15Q9Y5E8 787 aa19.22■□□□□ 0.67
COL7A1-204ENST00000462475 IFNL3Q8IZI9 196 aa19.21■□□□□ 0.67
COL7A1-204ENST00000462475 LRRC47Q8N1G4 583 aaKnown RBP19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms