RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 SHHQ15465 462 aa14.85□□□□□ -0.03
GPNMB-204ENST00000459927 CTR9Q6PD62 1173 aa14.85□□□□□ -0.03
GPNMB-204ENST00000459927 C16orf86Q6ZW13 317 aa14.85□□□□□ -0.03
GPNMB-204ENST00000459927 MYCNP04198 464 aaPredicted RBP14.84□□□□□ -0.03
GPNMB-204ENST00000459927 STAT3P40763 770 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 SNX17Q15036 470 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 ZNF792Q3KQV3 632 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 C1orf53Q5VUE5 145 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 SAMD1Q6SPF0 538 aaPredicted RBP14.84□□□□□ -0.03
GPNMB-204ENST00000459927 RIOX2Q8IUF8 465 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 FERMT2Q96AC1 680 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.84□□□□□ -0.03
GPNMB-204ENST00000459927 PUS7LQ9H0K6 701 aaKnown RBP14.84□□□□□ -0.03
GPNMB-204ENST00000459927 FBXO28Q9NVF7 368 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 DIS3Q9Y2L1 958 aaKnown RBP14.84□□□□□ -0.03
GPNMB-204ENST00000459927 SLC4A4Q9Y6R1 1079 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 ZBED9Q6R2W3 1325 aa14.84□□□□□ -0.03
GPNMB-204ENST00000459927 VWA5AO00534 786 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 PGK2P07205 417 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 ZSCAN25Q6NSZ9 544 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 SH3RF1Q7Z6J0 888 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 AMOTL1Q8IY63 956 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 BADQ92934 168 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 DDRGK1Q96HY6 314 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 MMP19Q99542 508 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 TINF2Q9BSI4 451 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 CHMP4BQ9H444 224 aaKnown RBP14.83□□□□□ -0.04
GPNMB-204ENST00000459927 NRBP1Q9UHY1 535 aa14.83□□□□□ -0.04
GPNMB-204ENST00000459927 FRMPD3Q5JV73 1810 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 TRIM43BA6NCK2 446 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 TRIM60Q495X7 471 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 TRIM43Q96BQ3 446 aaPredicted RBP14.82□□□□□ -0.04
GPNMB-204ENST00000459927 FAM161BQ96MY7 647 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 GUCD1Q96NT3 240 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 STRBPQ96SI9 672 aaKnown RBP14.82□□□□□ -0.04
GPNMB-204ENST00000459927 PPP1R9AQ9ULJ8 1098 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 PHF24Q9UPV7 400 aa14.82□□□□□ -0.04
GPNMB-204ENST00000459927 BAZ2AQ9UIF9 1905 aaKnown RBP14.82□□□□□ -0.04
GPNMB-204ENST00000459927 ZNF865P0CJ78 1059 aaPredicted RBP14.81□□□□□ -0.04
GPNMB-204ENST00000459927 TAL1P17542 331 aaPredicted RBP14.81□□□□□ -0.04
GPNMB-204ENST00000459927 TLE2Q04725 743 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 KCTD2Q14681 263 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 SBK1Q52WX2 424 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 FAM47AQ5JRC9 791 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 C9orf50Q5SZB4 431 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 REPS2Q8NFH8 660 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 SEMA6BQ9H3T3 888 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 GOPCQ9HD26 462 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 TACC3Q9Y6A5 838 aa14.81□□□□□ -0.04
GPNMB-204ENST00000459927 NAV1Q8NEY1 1877 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 GSG1L2A8MUP6 293 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 F5H6K3 240 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 SMARCA5O60264 1052 aaPredicted RBP14.8□□□□□ -0.04
GPNMB-204ENST00000459927 PGK1P00558 417 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 RARBP10826 455 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 KLRC3Q07444 240 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 FAM83BQ5T0W9 1011 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 DIEXFQ68CQ4 756 aaKnown RBP14.8□□□□□ -0.04
GPNMB-204ENST00000459927 LRRCC1Q9C099 1032 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 XPNPEP3Q9NQH7 507 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 PRDM5Q9NQX1 630 aaPredicted RBP14.8□□□□□ -0.04
GPNMB-204ENST00000459927 PDLIM7Q9NR12 457 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 NYAP2Q9P242 653 aa14.8□□□□□ -0.04
GPNMB-204ENST00000459927 ZNF214Q9UL59 606 aaPredicted RBP14.8□□□□□ -0.04
GPNMB-204ENST00000459927 RAD21O60216 631 aa14.79□□□□□ -0.04
GPNMB-204ENST00000459927 ITGB8P26012 769 aa14.79□□□□□ -0.04
GPNMB-204ENST00000459927 GIMAP6Q6P9H5 292 aa14.79□□□□□ -0.04
GPNMB-204ENST00000459927 RNF180Q86T96 592 aa14.79□□□□□ -0.04
GPNMB-204ENST00000459927 MKNK2Q9HBH9 465 aa14.79□□□□□ -0.04
GPNMB-204ENST00000459927 RIPK3Q9Y572 518 aa14.79□□□□□ -0.04
GPNMB-204ENST00000459927 ZNF236Q9UL36 1845 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 MINDY4BA8MYZ0 360 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 SNAI1O95863 264 aaPredicted RBP14.78□□□□□ -0.04
GPNMB-204ENST00000459927 RASA1P20936 1047 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 COPB2P35606 906 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 ZNF697Q5TEC3 545 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 STK11IPQ8N1F8 1099 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 MSL3Q8N5Y2 521 aaKnown RBP14.78□□□□□ -0.04
GPNMB-204ENST00000459927 PRPF38AQ8NAV1 312 aaKnown RBP14.78□□□□□ -0.04
GPNMB-204ENST00000459927 OSBP2Q969R2 916 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 MKL1Q969V6 931 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 CDX2Q99626 313 aaPredicted RBP14.78□□□□□ -0.04
GPNMB-204ENST00000459927 TSEN34Q9BSV6 310 aaKnown RBP14.78□□□□□ -0.04
GPNMB-204ENST00000459927 ECHDC1Q9NTX5 307 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 CLIP2Q9UDT6 1046 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 LAMA2P24043 3122 aaKnown RBP14.78□□□□□ -0.04
GPNMB-204ENST00000459927 MYH8P13535 1937 aa14.78□□□□□ -0.04
GPNMB-204ENST00000459927 KIAA0355O15063 1070 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 AKR1A1P14550 325 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 SMAD3P84022 425 aaKnown RBP14.77□□□□□ -0.05
GPNMB-204ENST00000459927 MAMDC4Q6UXC1 1216 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 ZNF444Q8N0Y2 327 aaPredicted RBP14.77□□□□□ -0.05
GPNMB-204ENST00000459927 KLHDC9Q8NEP7 349 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 DDX11Q96FC9 970 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 TOX2Q96NM4 488 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 NUP88Q99567 741 aaPredicted RBP14.77□□□□□ -0.05
GPNMB-204ENST00000459927 SLF1Q9BQI6 1058 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 COL25A1Q9BXS0 654 aaPredicted RBP14.77□□□□□ -0.05
GPNMB-204ENST00000459927 DCTPP1Q9H773 170 aa14.77□□□□□ -0.05
GPNMB-204ENST00000459927 ARPP21Q9UBL0 812 aaPredicted RBP14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms