RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 M0R2N6 131 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 TOP1P11387 765 aaKnown RBP17.14■□□□□ 0.33
LDLR-202ENST00000455727 BTDP43251 543 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 SLC4A8Q2Y0W8 1093 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 C16orf86Q6ZW13 317 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 USP17L1Q7RTZ2 530 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 TMC4Q7Z404 712 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 STAG2Q8N3U4 1231 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 IQUBQ8NA54 791 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 DAGLBQ8NCG7 672 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 GPR101Q96P66 508 aaPredicted RBP17.14■□□□□ 0.33
LDLR-202ENST00000455727 MYH1P12882 1939 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 LRRC37AA6NMS7 1700 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 E2F4Q16254 413 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 MAPKAPK5Q8IW41 473 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 CCDC148Q8NFR7 591 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 MED15Q96RN5 788 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 TRMT1Q9NXH9 659 aaKnown RBP17.14■□□□□ 0.33
LDLR-202ENST00000455727 FOCADQ5VW36 1801 aa17.14■□□□□ 0.33
LDLR-202ENST00000455727 LTBP1Q14766 1721 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 CCP110O43303 1012 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 HMGB2P26583 209 aaKnown RBP17.13■□□□□ 0.33
LDLR-202ENST00000455727 LONP1P36776 959 aaKnown RBP17.13■□□□□ 0.33
LDLR-202ENST00000455727 TBX2Q13207 712 aaPredicted RBP17.13■□□□□ 0.33
LDLR-202ENST00000455727 ZNF827Q17R98 1081 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 C4orf32Q8N8J7 132 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 TSC1Q92574 1164 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 TMEM47Q9BQJ4 181 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 INTS13Q9NVM9 706 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 GAKO14976 1311 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 CDK11BP21127 795 aaKnown RBP17.13■□□□□ 0.33
LDLR-202ENST00000455727 AFMP43652 599 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 NEDD1Q8NHV4 660 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 TBC1D16Q8TBP0 767 aa17.13■□□□□ 0.33
LDLR-202ENST00000455727 FAM205AQ6ZU69 1335 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 MCM7P33993 719 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 CDK8P49336 464 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 CUL4BQ13620 913 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 IL17AQ16552 155 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 SPATA1Q5VX52 437 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 TEX11Q8IYF3 940 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 KIF18AQ8NI77 898 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 ANKRD7Q92527 254 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 PPP1R13BQ96KQ4 1090 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 BARHL2Q9NY43 387 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 TMEM232C9JQI7 657 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 ADAMTS3O15072 1205 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 CYTH3O43739 400 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 SMARCA1P28370 1054 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 RHBDL3P58872 404 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 FCHSD1Q86WN1 690 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 SLC44A5Q8NCS7 719 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 SPZ1Q9BXG8 430 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 POLLQ9UGP5 575 aa17.12■□□□□ 0.33
LDLR-202ENST00000455727 SAP30BPQ9UHR5 308 aaKnown RBP17.12■□□□□ 0.33
LDLR-202ENST00000455727 NOVP48745 357 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 SLC35G1Q2M3R5 365 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 MFSD14BQ5SR56 506 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 PDXDC2PQ6P474 469 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 GPKOWQ92917 476 aaPredicted RBP eCLIP17.11■□□□□ 0.337e-9■□□□□ 10.9
LDLR-202ENST00000455727 STX8Q9UNK0 236 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 SNED1Q8TER0 1413 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 FLT1P17948 1338 aa17.11■□□□□ 0.33
LDLR-202ENST00000455727 POLRMTO00411 1230 aaKnown RBP17.1■□□□□ 0.33
LDLR-202ENST00000455727 NR1I3Q14994 352 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 SPECC1LQ69YQ0 1117 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 TYW1BQ6NUM6 668 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 TRMT44Q8IYL2 757 aaKnown RBP17.1■□□□□ 0.33
LDLR-202ENST00000455727 ZNF592Q92610 1267 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 EYA3Q99504 573 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 CCDC194A0A1B0GVG4 234 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 STXBP3O00186 592 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 DDR1Q08345 913 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 WWC2Q6AWC2 1192 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 SP8Q8IXZ3 490 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 SAMSN1Q9NSI8 373 aaKnown RBP17.1■□□□□ 0.33
LDLR-202ENST00000455727 PCDHA6Q9UN73 950 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 SUGT1Q9Y2Z0 365 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 PCDHA8Q9Y5H6 950 aa17.1■□□□□ 0.33
LDLR-202ENST00000455727 A0A1B0GTH6 734 aa17.09■□□□□ 0.33
LDLR-202ENST00000455727 PPP1R3GB7ZBB8 358 aa17.09■□□□□ 0.33
LDLR-202ENST00000455727 LAD1O00515 517 aa17.09■□□□□ 0.33
LDLR-202ENST00000455727 GTPBP6O43824 516 aaPredicted RBP17.09■□□□□ 0.33
LDLR-202ENST00000455727 TXLNAP40222 546 aa17.09■□□□□ 0.33
LDLR-202ENST00000455727 KLRF2D3W0D1 207 aa17.09■□□□□ 0.33
LDLR-202ENST00000455727 CD44P16070 742 aaKnown RBP17.09■□□□□ 0.33
LDLR-202ENST00000455727 CCDC12Q8WUD4 166 aaPredicted RBP17.09■□□□□ 0.33
LDLR-202ENST00000455727 ARHGAP6O43182 974 aa17.08■□□□□ 0.33
LDLR-202ENST00000455727 CDKAL1Q5VV42 579 aa17.08■□□□□ 0.33
LDLR-202ENST00000455727 ZMYND12Q9H0C1 365 aa17.08■□□□□ 0.33
LDLR-202ENST00000455727 SYNRGQ9UMZ2 1314 aa17.08■□□□□ 0.33
LDLR-202ENST00000455727 DTHD1Q6ZMT9 781 aa17.08■□□□□ 0.32
LDLR-202ENST00000455727 APTXQ7Z2E3 356 aaKnown RBP17.08■□□□□ 0.32
LDLR-202ENST00000455727 HEATR3Q7Z4Q2 680 aa17.08■□□□□ 0.32
LDLR-202ENST00000455727 TMEM139Q8IV31 216 aa17.08■□□□□ 0.32
LDLR-202ENST00000455727 CTAGE1Q96RT6 745 aa17.08■□□□□ 0.32
LDLR-202ENST00000455727 C6orf229H3BNL8 230 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 STX10O60499 249 aa17.07■□□□□ 0.32
LDLR-202ENST00000455727 PARP1P09874 1014 aaKnown RBP17.07■□□□□ 0.32
LDLR-202ENST00000455727 CASP1P29466 404 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms