RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 IRX6P78412 446 aaPredicted RBP25.23■■□□□ 1.63
HMGB3-205ENST00000455596 NMIQ13287 307 aaPredicted RBP25.23■■□□□ 1.63
HMGB3-205ENST00000455596 PLS1Q14651 629 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 FAM83BQ5T0W9 1011 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 SHCBP1Q8NEM2 672 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 NEDD1Q8NHV4 660 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 CEP95Q96GE4 821 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 MTMR4Q9NYA4 1195 aa25.23■■□□□ 1.63
HMGB3-205ENST00000455596 F5H6K3 240 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 TFAP4Q01664 338 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 CTDSPL2Q05D32 466 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 KLRC3Q07444 240 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 GRB14Q14449 540 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 ALX1Q15699 326 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 CCL14Q16627 93 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 FBXO28Q9NVF7 368 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 ADAMTS5Q9UNA0 930 aa25.22■■□□□ 1.63
HMGB3-205ENST00000455596 PLXNA1Q9UIW2 1896 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 STRNO43815 780 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 TTLL1O95922 423 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 PRKAR2AP13861 404 aaKnown RBP25.21■■□□□ 1.63
HMGB3-205ENST00000455596 ERCC3P19447 782 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 FAM47AQ5JRC9 791 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 MAP3K21Q5TCX8 1036 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 MKL1Q969V6 931 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 CRISPLD2Q9H0B8 497 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 ANAPC4Q9UJX5 808 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 PPP1R9AQ9ULJ8 1098 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 SYNPO2Q9UMS6 1093 aa25.21■■□□□ 1.63
HMGB3-205ENST00000455596 FARP2O94887 1054 aaPredicted RBP25.2■■□□□ 1.62
HMGB3-205ENST00000455596 NDUFB10O96000 172 aa25.2■■□□□ 1.62
HMGB3-205ENST00000455596 SDSP20132 328 aa25.2■■□□□ 1.62
HMGB3-205ENST00000455596 UBE2Q1Q7Z7E8 422 aa25.2■■□□□ 1.62
HMGB3-205ENST00000455596 MROH8Q9H579 483 aa25.2■■□□□ 1.62
HMGB3-205ENST00000455596 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.2■■□□□ 1.62
HMGB3-205ENST00000455596 LAMA4Q16363 1823 aa25.19■■□□□ 1.62
HMGB3-205ENST00000455596 CCDC171Q6TFL3 1326 aa25.19■■□□□ 1.62
HMGB3-205ENST00000455596 HOXC6P09630 235 aa25.19■■□□□ 1.62
HMGB3-205ENST00000455596 HSPD1P10809 573 aaKnown RBP25.19■■□□□ 1.62
HMGB3-205ENST00000455596 MFAP1P55081 439 aaKnown RBP25.19■■□□□ 1.62
HMGB3-205ENST00000455596 CACNB2Q08289 660 aaPredicted RBP25.19■■□□□ 1.62
HMGB3-205ENST00000455596 TMEM132BQ14DG7 1078 aa25.19■■□□□ 1.62
HMGB3-205ENST00000455596 ZNF589Q86UQ0 364 aaPredicted RBP25.19■■□□□ 1.62
HMGB3-205ENST00000455596 NCAPG2Q86XI2 1143 aa25.19■■□□□ 1.62
HMGB3-205ENST00000455596 NUP88Q99567 741 aaPredicted RBP25.19■■□□□ 1.62
HMGB3-205ENST00000455596 TSPY2A6NKD2 308 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 VWA5AO00534 786 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 SLC25A27O95847 323 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 FGAP02671 866 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 PPP4R3BQ5MIZ7 849 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 DPP9Q86TI2 863 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 SLF1Q9BQI6 1058 aa25.18■■□□□ 1.62
HMGB3-205ENST00000455596 ZMYM6O95789 1325 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 ADORA2AP29274 412 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 MFSD14CQ5VZR4 134 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 LRRC47Q8N1G4 583 aaKnown RBP25.17■■□□□ 1.62
HMGB3-205ENST00000455596 GMCL1P1Q8NEA9 526 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 NPLOC4Q8TAT6 608 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 HTATIP2Q9BUP3 242 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 FLRT1Q9NZU1 646 aa25.17■■□□□ 1.62
HMGB3-205ENST00000455596 INCENPQ9NQS7 918 aa25.16■■□□□ 1.62
HMGB3-205ENST00000455596 DIAPH3Q9NSV4 1193 aa25.16■■□□□ 1.62
HMGB3-205ENST00000455596 ALPK3Q96L96 1907 aa25.16■■□□□ 1.62
HMGB3-205ENST00000455596 MKI67P46013 3256 aaKnown RBP25.15■■□□□ 1.62
HMGB3-205ENST00000455596 HIP1O00291 1037 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 ORC4O43929 436 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 RANBP6O60518 1105 aaKnown RBP25.15■■□□□ 1.62
HMGB3-205ENST00000455596 RIOX2Q8IUF8 465 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 ABRAQ8N0Z2 381 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 ANKLE1Q8NAG6 615 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 PRPF38AQ8NAV1 312 aaKnown RBP25.15■■□□□ 1.62
HMGB3-205ENST00000455596 DPF3Q92784 378 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 SLC5A4Q9NY91 659 aa25.15■■□□□ 1.62
HMGB3-205ENST00000455596 FGRP09769 529 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 FCER1AP12319 257 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 CCND3P30281 292 aaPredicted RBP25.14■■□□□ 1.62
HMGB3-205ENST00000455596 COPB2P35606 906 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 STAT3P40763 770 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 SLFN13Q68D06 897 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 CWC27Q6UX04 472 aaKnown RBP25.14■■□□□ 1.62
HMGB3-205ENST00000455596 REPS2Q8NFH8 660 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 TOMM22Q9NS69 142 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 FEM1BQ9UK73 627 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 ZNF214Q9UL59 606 aaPredicted RBP25.14■■□□□ 1.62
HMGB3-205ENST00000455596 TACC3Q9Y6A5 838 aa25.14■■□□□ 1.62
HMGB3-205ENST00000455596 IL17RBQ9NRM6 502 aa25.13■■□□□ 1.61
HMGB3-205ENST00000455596 OGDHLQ9ULD0 1010 aa25.13■■□□□ 1.61
HMGB3-205ENST00000455596 STX8Q9UNK0 236 aa25.13■■□□□ 1.61
HMGB3-205ENST00000455596 BMP3P12645 472 aa25.12■■□□□ 1.61
HMGB3-205ENST00000455596 PDE4AP27815 886 aa25.12■■□□□ 1.61
HMGB3-205ENST00000455596 OLFML2BQ68BL8 750 aa25.12■■□□□ 1.61
HMGB3-205ENST00000455596 PAWRQ96IZ0 340 aaKnown RBP25.12■■□□□ 1.61
HMGB3-205ENST00000455596 MMP19Q99542 508 aa25.12■■□□□ 1.61
HMGB3-205ENST00000455596 CTDP1Q9Y5B0 961 aaPredicted RBP25.12■■□□□ 1.61
HMGB3-205ENST00000455596 COBLO75128 1261 aa25.11■■□□□ 1.61
HMGB3-205ENST00000455596 RRP12Q5JTH9 1297 aaKnown RBP25.11■■□□□ 1.61
HMGB3-205ENST00000455596 NECAB2Q7Z6G3 386 aa25.11■■□□□ 1.61
HMGB3-205ENST00000455596 KIFC2Q96AC6 838 aa25.11■■□□□ 1.61
HMGB3-205ENST00000455596 NMT2O60551 498 aa25.1■■□□□ 1.61
HMGB3-205ENST00000455596 ZBED4O75132 1171 aa25.1■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms