RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 SPECC1LQ69YQ0 1117 aa13.53□□□□□ -0.24
SMPD4-213ENST00000454468 EPC1Q9H2F5 836 aa13.53□□□□□ -0.24
SMPD4-213ENST00000454468 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.53□□□□□ -0.24
SMPD4-213ENST00000454468 IMPACTQ9P2X3 320 aa13.53□□□□□ -0.24
SMPD4-213ENST00000454468 PUF60Q9UHX1 559 aaKnown RBP13.53□□□□□ -0.24
SMPD4-213ENST00000454468 PARP4Q9UKK3 1724 aaKnown RBP13.53□□□□□ -0.24
SMPD4-213ENST00000454468 KRT18P05783 430 aaKnown RBP13.53□□□□□ -0.24
SMPD4-213ENST00000454468 CDK8P49336 464 aa13.53□□□□□ -0.24
SMPD4-213ENST00000454468 ZNF710Q8N1W2 664 aa13.53□□□□□ -0.24
SMPD4-213ENST00000454468 NOC3LQ8WTT2 800 aaKnown RBP13.53□□□□□ -0.24
SMPD4-213ENST00000454468 HPSEQ9Y251 543 aa13.53□□□□□ -0.24
SMPD4-213ENST00000454468 AFF2P51816 1311 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 TRIM49BA6NDI0 452 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 SLFN14P0C7P3 912 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 MTIF2P46199 727 aaKnown RBP13.52□□□□□ -0.24
SMPD4-213ENST00000454468 NELFBQ8WX92 580 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 FERMT2Q96AC1 680 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 PHF20Q9BVI0 1012 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 IRX2Q9BZI1 471 aaPredicted RBP13.52□□□□□ -0.24
SMPD4-213ENST00000454468 USP40Q9NVE5 1235 aa13.52□□□□□ -0.24
SMPD4-213ENST00000454468 IKBKBO14920 756 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 GNAQP50148 359 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 NAP1L1P55209 391 aaKnown RBP13.52□□□□□ -0.25
SMPD4-213ENST00000454468 SNAP25P60880 206 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 VPS72Q15906 364 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 CCDC148Q8NFR7 591 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 TBC1D7Q9P0N9 293 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 C12orf60Q5U649 245 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 GJA10Q969M2 543 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 CEP95Q96GE4 821 aa13.52□□□□□ -0.25
SMPD4-213ENST00000454468 GJD4Q96KN9 370 aaPredicted RBP13.52□□□□□ -0.25
SMPD4-213ENST00000454468 SOWAHDA6NJG2 315 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 USP17L5A8MUK1 530 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 AKR1B15C9JRZ8 316 aaPredicted RBP13.51□□□□□ -0.25
SMPD4-213ENST00000454468 BMP15O95972 392 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 PPP2R5BQ15173 497 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 KCTD1Q719H9 257 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 HPS3Q969F9 1004 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 C6orf50Q9HD87 102 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 LRRC4BQ9NT99 713 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 TMEM260Q9NX78 707 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 TUBE1Q9UJT0 475 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 LEMD3Q9Y2U8 911 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 SEMA3EO15041 775 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 IPO7O95373 1038 aaKnown RBP13.51□□□□□ -0.25
SMPD4-213ENST00000454468 CASP14P31944 242 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 VSTM4Q8IW00 320 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 NCBP1Q09161 790 aaKnown RBP13.51□□□□□ -0.25
SMPD4-213ENST00000454468 WWC2Q6AWC2 1192 aa13.51□□□□□ -0.25
SMPD4-213ENST00000454468 CNTNAP5Q8WYK1 1306 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 CD44P16070 742 aaKnown RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 PDE4DQ08499 809 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 RBL2Q08999 1139 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 PFKFB3Q16875 520 aaPredicted RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 TOGARAM2Q6ZUX3 1019 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 SRRTQ9BXP5 876 aaKnown RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 IL17RBQ9NRM6 502 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 FAM205AQ6ZU69 1335 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 CCP110O43303 1012 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 PAK1Q13153 545 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 ZYXQ15942 572 aaKnown RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 ZNF569Q5MCW4 686 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 CCDC94Q9BW85 323 aaPredicted RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 TMEM60Q9H2L4 133 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 POLD4Q9HCU8 107 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 EXOC1Q9NV70 894 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 PPP2R2CQ9Y2T4 447 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 POLR3GO15318 223 aaPredicted RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 ACTN4O43707 911 aaKnown RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 APBA3O96018 575 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 TRIM21P19474 475 aaKnown RBP13.5□□□□□ -0.25
SMPD4-213ENST00000454468 UBE2SQ16763 222 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 SLF2Q8IX21 1173 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 DRC1Q96MC2 740 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 HINFPQ9BQA5 517 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 SLF1Q9BQI6 1058 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 GUCA1BQ9UMX6 200 aa13.5□□□□□ -0.25
SMPD4-213ENST00000454468 SRCAPQ6ZRS2 3230 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 USH1GQ495M9 461 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 TYW1BQ6NUM6 668 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 PCDHA4Q9UN74 947 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 KIF2AO00139 706 aaPredicted RBP13.49□□□□□ -0.25
SMPD4-213ENST00000454468 RPN1P04843 607 aaKnown RBP13.49□□□□□ -0.25
SMPD4-213ENST00000454468 KRT9P35527 623 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 NONOQ15233 471 aaKnown RBP eCLIP13.49□□□□□ -0.25
SMPD4-213ENST00000454468 TBCKQ8TEA7 893 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 SHISA4Q96DD7 197 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 CALML4Q96GE6 196 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 PKD1L3Q7Z443 1732 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 DISP2A7MBM2 1401 aa13.49□□□□□ -0.25
SMPD4-213ENST00000454468 KIF5CO60282 957 aa13.48□□□□□ -0.25
SMPD4-213ENST00000454468 CABP7Q86V35 215 aa13.48□□□□□ -0.25
SMPD4-213ENST00000454468 ZFP91Q96JP5 570 aaPredicted RBP13.48□□□□□ -0.25
SMPD4-213ENST00000454468 SLC39A2Q9NP94 309 aa13.48□□□□□ -0.25
SMPD4-213ENST00000454468 POLLQ9UGP5 575 aa13.48□□□□□ -0.25
SMPD4-213ENST00000454468 ETF1P62495 437 aaKnown RBP13.48□□□□□ -0.25
SMPD4-213ENST00000454468 CACNB1Q02641 598 aaPredicted RBP13.48□□□□□ -0.25
SMPD4-213ENST00000454468 MORC3Q14149 939 aa13.48□□□□□ -0.25
SMPD4-213ENST00000454468 SPATA1Q5VX52 437 aa13.48□□□□□ -0.25
SMPD4-213ENST00000454468 REXO1Q8N1G1 1221 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms