RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 STRBPQ96SI9 672 aaKnown RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 MOV10L1Q9BXT6 1211 aaKnown RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 PRO3102Q9H379 93 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 DDX20Q9UHI6 824 aaKnown RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 NRBP1Q9UHY1 535 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 ADAMTS5Q9UNA0 930 aa8.46□□□□□ -1.06
VPS41-208ENST00000448833 DIS3Q9Y2L1 958 aaKnown RBP8.46□□□□□ -1.06
VPS41-208ENST00000448833 RANBP2P49792 3224 aaKnown RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 PATL2C9JE40 543 aaKnown RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 KBTBD13C9JR72 458 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 DNM1LO00429 736 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 PEX10O60683 326 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 APPP05067 770 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 FDX1P10109 184 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 CYP2D6P10635 497 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 COL6A1P12109 1028 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 EEF2P13639 858 aaKnown RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 AKR1B1P15121 316 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 ERCC3P19447 782 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 ADORA2AP29274 412 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 CCND3P30281 292 aaPredicted RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 PDE4BQ07343 736 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 AAMPQ13685 434 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 KCTD2Q14681 263 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 CCL14Q16627 93 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 POTEEQ6S8J3 1075 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 NCAPG2Q86XI2 1143 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 SIAH1Q8IUQ4 282 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 PRPF38AQ8NAV1 312 aaKnown RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 SLC44A5Q8NCS7 719 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 DIS3LQ8TF46 1054 aaKnown RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 GDF15Q99988 308 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 PUS7LQ9H0K6 701 aaKnown RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 NYAP2Q9P242 653 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 PRKAG2Q9UGJ0 569 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 STAP2Q9UGK3 403 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 CTDP1Q9Y5B0 961 aaPredicted RBP8.45□□□□□ -1.06
VPS41-208ENST00000448833 SMCHD1A6NHR9 2005 aa8.45□□□□□ -1.06
VPS41-208ENST00000448833 GSG1L2A8MUP6 293 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 MINDY4BA8MYZ0 360 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 SEPT4O43236 478 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 RAD21O60216 631 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 SMARCA5O60264 1052 aaPredicted RBP8.44□□□□□ -1.06
VPS41-208ENST00000448833 STAT3P40763 770 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 TDO2P48775 406 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 MNX1P50219 401 aaPredicted RBP8.44□□□□□ -1.06
VPS41-208ENST00000448833 C20orf194Q5TEA3 1177 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 RIOX2Q8IUF8 465 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 SPICE1Q8N0Z3 855 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 MSL3Q8N5Y2 521 aaKnown RBP8.44□□□□□ -1.06
VPS41-208ENST00000448833 SPOCK2Q92563 424 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 MMP19Q99542 508 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 LBHD1Q9BQE6 289 aaPredicted RBP8.44□□□□□ -1.06
VPS41-208ENST00000448833 SENP6Q9GZR1 1112 aaPredicted RBP8.44□□□□□ -1.06
VPS41-208ENST00000448833 PPP1R9AQ9ULJ8 1098 aa8.44□□□□□ -1.06
VPS41-208ENST00000448833 GREB1LQ9C091 1923 aaPredicted RBP8.44□□□□□ -1.06
VPS41-208ENST00000448833 CYP2D7A0A087X1C5 515 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 VWA5AO00534 786 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 GPAA1O43292 621 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 ZBED4O75132 1171 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 IGHA2P01877 340 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 CYBAP13498 195 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 CYP2C19P33261 490 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 TMEM132BQ14DG7 1078 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 LRIT3Q3SXY7 679 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 NPLOC4Q8TAT6 608 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 MKL1Q969V6 931 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 ATG4CQ96DT6 458 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 MAML3Q96JK9 1138 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 TEX13BQ9BXU2 312 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 UBE2OQ9C0C9 1292 aaKnown RBP8.43□□□□□ -1.06
VPS41-208ENST00000448833 FLRT1Q9NZU1 646 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 FEM1BQ9UK73 627 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 PFASO15067 1338 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 ROBO3Q96MS0 1386 aa8.43□□□□□ -1.06
VPS41-208ENST00000448833 F5H6K3 240 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 ATP2A1O14983 1001 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 TTLL1O95922 423 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 TSPY3P0CV98 308 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 TSPY8P0CW00 308 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 RARBP10826 455 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 RASA1P20936 1047 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 OAZ1P54368 228 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 KLRC3Q07444 240 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 SLFNL1Q499Z3 407 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 RNF180Q86T96 592 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 IFNL3Q8IZI9 196 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 TDHQ8IZJ6 230 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 CHURC1Q8WUH1 139 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 OSBP2Q969R2 916 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 DDX11Q96FC9 970 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 SLF1Q9BQI6 1058 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 TINF2Q9BSI4 451 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 FSD1Q9BTV5 496 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 NAPBQ9H115 298 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 CLIP2Q9UDT6 1046 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 FBXO40Q9UH90 709 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 ZMYND8Q9ULU4 1186 aaPredicted RBP8.42□□□□□ -1.06
VPS41-208ENST00000448833 CNPY2Q9Y2B0 182 aa8.42□□□□□ -1.06
VPS41-208ENST00000448833 SZT2Q5T011 3432 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms