RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 TREML2Q5T2D2 321 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 RAET1EQ8TD07 263 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 ACER1Q8TDN7 264 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 GINM1Q9NU53 330 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 PDRG1Q9NUG6 133 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 MTMR7Q9Y216 660 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 LOC285556D6RIA3 1793 aa20.2■□□□□ 0.82
LIME1-202ENST00000444951 CEP290O15078 2479 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 TTLL1O95922 423 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 GRK4P32298 578 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 WTAPQ15007 396 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 Q6ZUG5 572 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 LRRC47Q8N1G4 583 aaKnown RBP20.19■□□□□ 0.82
LIME1-202ENST00000444951 ENAHQ8N8S7 591 aaPredicted RBP20.19■□□□□ 0.82
LIME1-202ENST00000444951 FEZ1Q99689 392 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 AS3MTQ9HBK9 375 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 ARHGEF10LQ9HCE6 1279 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 TCP11L1Q9NUJ3 509 aa20.19■□□□□ 0.82
LIME1-202ENST00000444951 GREB1LQ9C091 1923 aaPredicted RBP20.19■□□□□ 0.82
LIME1-202ENST00000444951 NT5C2P49902 561 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 SPP2Q13103 211 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 CCDC178Q5BJE1 867 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 IFIT1BQ5T764 474 aaKnown RBP20.18■□□□□ 0.82
LIME1-202ENST00000444951 NFXL1Q6ZNB6 911 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 NOL8Q76FK4 1167 aaKnown RBP20.18■□□□□ 0.82
LIME1-202ENST00000444951 TMEM87BQ96K49 555 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 SENP2Q9HC62 589 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 NAP1L2Q9ULW6 460 aaPredicted RBP20.18■□□□□ 0.82
LIME1-202ENST00000444951 SLC45A1Q9Y2W3 748 aa20.18■□□□□ 0.82
LIME1-202ENST00000444951 SH2B2O14492 632 aaPredicted RBP20.17■□□□□ 0.82
LIME1-202ENST00000444951 HOXD10P28358 340 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 FCGRTP55899 365 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 RCSD1Q6JBY9 416 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 SIAH1Q8IUQ4 282 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 IGDCC4Q8TDY8 1250 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 IL17RAQ96F46 866 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 LARP6Q9BRS8 491 aaKnown RBP20.17■□□□□ 0.82
LIME1-202ENST00000444951 KAT14Q9H8E8 782 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 NYAP2Q9P242 653 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 AGTPBP1Q9UPW5 1226 aa20.17■□□□□ 0.82
LIME1-202ENST00000444951 A0A1W2PRG0 241 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 MTMR2Q13614 643 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 RABEP1Q15276 862 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 SEC23AQ15436 765 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 PPP4R3BQ5MIZ7 849 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 ZNF280CQ8ND82 737 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 BRF1Q92994 677 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 TMEM47Q9BQJ4 181 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 LY9Q9HBG7 655 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 WDR19Q8NEZ3 1342 aa20.16■□□□□ 0.82
LIME1-202ENST00000444951 CCDC69A6NI79 296 aa20.15■□□□□ 0.82
LIME1-202ENST00000444951 TOP1P11387 765 aaKnown RBP20.15■□□□□ 0.82
LIME1-202ENST00000444951 CCL5P13501 91 aa20.15■□□□□ 0.82
LIME1-202ENST00000444951 HABP4Q5JVS0 413 aaKnown RBP20.15■□□□□ 0.82
LIME1-202ENST00000444951 DGKHQ86XP1 1220 aa20.15■□□□□ 0.82
LIME1-202ENST00000444951 RAB11FIP4Q86YS3 637 aa20.15■□□□□ 0.82
LIME1-202ENST00000444951 WDR18Q9BV38 432 aa20.15■□□□□ 0.82
LIME1-202ENST00000444951 ISY1Q9ULR0 285 aaKnown RBP20.15■□□□□ 0.82
LIME1-202ENST00000444951 MYH4Q9Y623 1939 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 USP17L10C9JJH3 530 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 FLT3LGP49771 235 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 HMGCS2P54868 508 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 APOBRQ0VD83 1088 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 ANKRD13CQ8N6S4 541 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 SMCR8Q8TEV9 937 aaPredicted RBP20.14■□□□□ 0.81
LIME1-202ENST00000444951 TTC14Q96N46 770 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 SH2D4AQ9H788 454 aa20.14■□□□□ 0.81
LIME1-202ENST00000444951 ELNP15502 786 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 AK2P54819 239 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 TOB2Q14106 344 aaPredicted RBP20.13■□□□□ 0.81
LIME1-202ENST00000444951 SPICE1Q8N0Z3 855 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 PROCA1Q8NCQ7 364 aaPredicted RBP20.13■□□□□ 0.81
LIME1-202ENST00000444951 PNMA1Q8ND90 353 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 MYL10Q9BUA6 226 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 UNC93B1Q9H1C4 597 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 BIN2Q9UBW5 565 aaPredicted RBP20.13■□□□□ 0.81
LIME1-202ENST00000444951 TMX2Q9Y320 296 aa20.13■□□□□ 0.81
LIME1-202ENST00000444951 KLF18A0A0U1RQI7 1052 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 TNPO2O14787 897 aaKnown RBP20.12■□□□□ 0.81
LIME1-202ENST00000444951 ADCY3O60266 1144 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 BACE1P56817 501 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 RASGRP2Q7LDG7 609 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 SLAIN1Q8ND83 568 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 NUP133Q8WUM0 1156 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 ANKS1AQ92625 1134 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 MKL1Q969V6 931 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 MTA3Q9BTC8 594 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 TBC1D2Q9BYX2 928 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 RNF208Q9H0X6 261 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 GOPCQ9HD26 462 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 BRPF3Q9ULD4 1205 aa20.12■□□□□ 0.81
LIME1-202ENST00000444951 ST18O60284 1047 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 GJB1P08034 283 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 LIFRP42702 1097 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 GJA8P48165 433 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 NOVP48745 357 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 KIAA1755Q5JYT7 1200 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 SLFN13Q68D06 897 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 SYNE3Q6ZMZ3 975 aa20.11■□□□□ 0.81
LIME1-202ENST00000444951 UBE2Q1Q7Z7E8 422 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms