RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 PARP1P09874 1014 aaKnown RBP29.41■■■□□ 2.3
CPNE1-216ENST00000437340 TTC38Q5R3I4 469 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 DACT2Q5SW24 774 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 SOGA3Q5TF21 947 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 SERPINB13Q9UIV8 391 aa29.41■■■□□ 2.3
CPNE1-216ENST00000437340 HOOK1Q9UJC3 728 aaKnown RBP29.41■■■□□ 2.3
CPNE1-216ENST00000437340 PPIP5K2O43314 1243 aa29.4■■■□□ 2.3
CPNE1-216ENST00000437340 CYTH3O43739 400 aa29.4■■■□□ 2.3
CPNE1-216ENST00000437340 DHX40Q8IX18 779 aaKnown RBP29.4■■■□□ 2.3
CPNE1-216ENST00000437340 CNNM3Q8NE01 707 aa29.4■■■□□ 2.3
CPNE1-216ENST00000437340 KCNQ5Q9NR82 932 aa29.4■■■□□ 2.3
CPNE1-216ENST00000437340 PCDHA4Q9UN74 947 aa29.4■■■□□ 2.3
CPNE1-216ENST00000437340 COL4A5P29400 1685 aa29.39■■■□□ 2.3
CPNE1-216ENST00000437340 KLRF2D3W0D1 207 aa29.39■■■□□ 2.3
CPNE1-216ENST00000437340 HLA-DOAP06340 250 aa29.39■■■□□ 2.3
CPNE1-216ENST00000437340 VEGFAP15692 232 aaPredicted RBP29.39■■■□□ 2.3
CPNE1-216ENST00000437340 LONRF3Q496Y0 759 aa29.39■■■□□ 2.3
CPNE1-216ENST00000437340 BLIDQ8IZY5 108 aa29.39■■■□□ 2.3
CPNE1-216ENST00000437340 DAGLBQ8NCG7 672 aa29.39■■■□□ 2.3
CPNE1-216ENST00000437340 BAZ2BQ9UIF8 2168 aaKnown RBP29.39■■■□□ 2.29
CPNE1-216ENST00000437340 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP29.39■■■□□ 2.29
CPNE1-216ENST00000437340 IGKV6D-41A0A0C4DH26 115 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 ZNF75DP51815 510 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 GRIN1Q05586 938 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 SLC35G1Q2M3R5 365 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 PIBF1Q8WXW3 757 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 TRIM5Q9C035 493 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 EHD4Q9H223 541 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 BARHL2Q9NY43 387 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 MTMR4Q9NYA4 1195 aa29.39■■■□□ 2.29
CPNE1-216ENST00000437340 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP29.38■■■□□ 2.292e-10■□□□□ 8.4
CPNE1-216ENST00000437340 ADAMTSL1Q8N6G6 1762 aa29.37■■■□□ 2.29
CPNE1-216ENST00000437340 DPCR1Q3MIW9 517 aa29.37■■■□□ 2.29
CPNE1-216ENST00000437340 CSRNP2Q9H175 543 aa29.37■■■□□ 2.29
CPNE1-216ENST00000437340 ZNF277Q9NRM2 450 aaPredicted RBP29.37■■■□□ 2.29
CPNE1-216ENST00000437340 CDC25BP30305 580 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 ATP2C1P98194 919 aaPredicted RBP29.36■■■□□ 2.29
CPNE1-216ENST00000437340 WWC2Q6AWC2 1192 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 KANK3Q6NY19 840 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 PIK3AP1Q6ZUJ8 805 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 METTL16Q86W50 562 aaKnown RBP29.36■■■□□ 2.29
CPNE1-216ENST00000437340 NPM3O75607 178 aaKnown RBP29.36■■■□□ 2.29
CPNE1-216ENST00000437340 SPECC1Q5M775 1068 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 GPKOWQ92917 476 aaPredicted RBP eCLIP29.36■■■□□ 2.291e-7■■■■□ 26.1
CPNE1-216ENST00000437340 SERPINA10Q9UK55 444 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 BCS1LQ9Y276 419 aa29.36■■■□□ 2.29
CPNE1-216ENST00000437340 A0A087WWV3 80 aa29.35■■■□□ 2.29
CPNE1-216ENST00000437340 M0R2N6 131 aa29.35■■■□□ 2.29
CPNE1-216ENST00000437340 STXBP3O00186 592 aa29.35■■■□□ 2.29
CPNE1-216ENST00000437340 AKR1B1P15121 316 aa29.35■■■□□ 2.29
CPNE1-216ENST00000437340 NOM1Q5C9Z4 860 aaKnown RBP29.35■■■□□ 2.29
CPNE1-216ENST00000437340 PPP4R3BQ5MIZ7 849 aa29.35■■■□□ 2.29
CPNE1-216ENST00000437340 CCDC12Q8WUD4 166 aaPredicted RBP29.35■■■□□ 2.29
CPNE1-216ENST00000437340 DHX36Q9H2U1 1008 aaKnown RBP29.35■■■□□ 2.29
CPNE1-216ENST00000437340 MDM2Q00987 491 aaPredicted RBP29.34■■■□□ 2.29
CPNE1-216ENST00000437340 ZNF174Q15697 407 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 KIAA0825Q8IV33 1275 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 AOPEPQ8N6M6 819 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 IDI2Q9BXS1 227 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 YDJCA8MPS7 323 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 POLR2DO15514 142 aaKnown RBP29.34■■■□□ 2.29
CPNE1-216ENST00000437340 SHMT1P34896 483 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 PNOCQ13519 176 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 TYW1BQ6NUM6 668 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 CCDC34Q96HJ3 373 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 MTMR7Q9Y216 660 aa29.34■■■□□ 2.29
CPNE1-216ENST00000437340 WNT7AO00755 349 aa29.33■■■□□ 2.29
CPNE1-216ENST00000437340 GOLGA8HP0CJ92 632 aa29.33■■■□□ 2.29
CPNE1-216ENST00000437340 NFIAQ12857 509 aa29.33■■■□□ 2.29
CPNE1-216ENST00000437340 ASPRV1Q53RT3 343 aa29.33■■■□□ 2.29
CPNE1-216ENST00000437340 USP17L2Q6R6M4 530 aa29.33■■■□□ 2.29
CPNE1-216ENST00000437340 HEATR3Q7Z4Q2 680 aa29.33■■■□□ 2.29
CPNE1-216ENST00000437340 RRP36Q96EU6 259 aaKnown RBP29.33■■■□□ 2.29
CPNE1-216ENST00000437340 BIN1O00499 593 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 TTLL1O95922 423 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 SNHG28P0DPA3 235 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 PDHBP11177 359 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 PTGDRQ13258 359 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 MRFAP1L1Q96HT8 127 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 CCDC17Q96LX7 622 aa29.32■■■□□ 2.28
CPNE1-216ENST00000437340 SMTNL1A8MU46 457 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 hCG_1984214I3L0E3 225 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 NT5DC1Q5TFE4 455 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 LARGE2Q8N3Y3 721 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 ZNF713Q8N859 430 aaPredicted RBP29.31■■■□□ 2.28
CPNE1-216ENST00000437340 ZMYND12Q9H0C1 365 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 IKBKBO14920 756 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 POSTNQ15063 836 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 ARL6IP4Q66PJ3 421 aaKnown RBP29.31■■■□□ 2.28
CPNE1-216ENST00000437340 RIOX1Q9H6W3 641 aa29.31■■■□□ 2.28
CPNE1-216ENST00000437340 SEC63Q9UGP8 760 aaKnown RBP29.31■■■□□ 2.28
CPNE1-216ENST00000437340 USP17L5A8MUK1 530 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 NFKBIEO00221 500 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 VPS33BQ9H267 617 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 TAOK3Q9H2K8 898 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 SERTAD1Q9UHV2 236 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 PCDHA6Q9UN73 950 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 PCDHA8Q9Y5H6 950 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 PCDHA5Q9Y5H7 936 aa29.3■■■□□ 2.28
CPNE1-216ENST00000437340 MYH8P13535 1937 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms