RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TMX3Q96JJ7 454 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 CLMNQ96JQ2 1002 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 TANGO6Q9C0B7 1094 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 GPHNQ9NQX3 736 aaPredicted RBP11.74□□□□□ -0.53
CD44-207ENST00000425428 CREBZFQ9NS37 354 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 FEM1BQ9UK73 627 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 BRPF3Q9ULD4 1205 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 MYH6P13533 1939 aa11.74□□□□□ -0.53
CD44-207ENST00000425428 KLRF2D3W0D1 207 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 NDUFB10O96000 172 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 PDHBP11177 359 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 XBP1P17861 261 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 OSBPP22059 807 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 HMGCS2P54868 508 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 INHBEP58166 350 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 HMGN5P82970 282 aaKnown RBP11.73□□□□□ -0.53
CD44-207ENST00000425428 GRM4Q14833 912 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 CCDC83Q8IWF9 413 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 SPICE1Q8N0Z3 855 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 GTF3C6Q969F1 213 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 WNK4Q96J92 1243 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 LLPHQ9BRT6 129 aaKnown RBP11.73□□□□□ -0.53
CD44-207ENST00000425428 MYL10Q9BUA6 226 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 PNMA3Q9UL41 463 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 SMC3Q9UQE7 1217 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 PHIPQ8WWQ0 1821 aa11.73□□□□□ -0.53
CD44-207ENST00000425428 MANSC4A6NHS7 340 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 IRF6O14896 467 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 FDX1P10109 184 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 RXRAP19793 462 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 SMARCA1P28370 1054 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 IRX3P78415 501 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 JAG1P78504 1218 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 SSRP1Q08945 709 aaKnown RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 SREBF2Q12772 1141 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 TROAPQ12815 778 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 ME3Q16798 604 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 SHROOM1Q2M3G4 852 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 REM2Q8IYK8 340 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 GPCPD1Q9NPB8 672 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 PNMA2Q9UL42 364 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 FRMPD2Q68DX3 1309 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 A0A1W2PRG0 241 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L15C9J2P7 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L13C9JLJ4 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 TMEM232C9JQI7 657 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L11C9JVI0 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L18D6R9N7 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L22D6RA61 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L17D6RBQ6 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L19D6RCP7 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L20D6RJB6 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 PDIA4P13667 645 aaKnown RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 ZNF543Q08ER8 600 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 USP17L24Q0WX57 530 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 GRM1Q13255 1194 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 DEFB115Q30KQ5 88 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 SH3D19Q5HYK7 790 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 SPRYD7Q5W111 196 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 SAMD1Q6SPF0 538 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 CCDC84Q86UT8 332 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 RAB11FIP4Q86YS3 637 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 RRP36Q96EU6 259 aaKnown RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 SENP2Q9HC62 589 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 HOXC10Q9NYD6 342 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.72□□□□□ -0.53
CD44-207ENST00000425428 KCNH4Q9UQ05 1017 aa11.72□□□□□ -0.53
CD44-207ENST00000425428 A0A0G2JLL6 359 aaPredicted RBP11.71□□□□□ -0.54
CD44-207ENST00000425428 FLOT1O75955 427 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 TRIM29Q14134 588 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 FAM83BQ5T0W9 1011 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 KCTD1Q719H9 257 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 PRRT2Q7Z6L0 340 aaPredicted RBP11.71□□□□□ -0.54
CD44-207ENST00000425428 SIAH1Q8IUQ4 282 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 NECAB1Q8N987 351 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 NKX2-3Q8TAU0 364 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 INTS4Q96HW7 963 aaKnown RBP11.71□□□□□ -0.54
CD44-207ENST00000425428 C12orf42Q96LP6 360 aa11.71□□□□□ -0.54
CD44-207ENST00000425428 RPAP3Q9H6T3 665 aaPredicted RBP11.71□□□□□ -0.54
CD44-207ENST00000425428 PTPRFP10586 1907 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 NID2Q14112 1375 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 CCL15-CCL14A0A0B4J2E2 113 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 ZBED4O75132 1171 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 SNHG28P0DPA3 235 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 VCAM1P19320 739 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 PDCP20941 246 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 SCRN1Q12765 414 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 MKRN3Q13064 507 aaKnown RBP11.7□□□□□ -0.54
CD44-207ENST00000425428 CCL15Q16663 113 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 CCDC82Q8N4S0 544 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 PRPF38AQ8NAV1 312 aaKnown RBP11.7□□□□□ -0.54
CD44-207ENST00000425428 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
CD44-207ENST00000425428 CWC22Q9HCG8 908 aaKnown RBP11.7□□□□□ -0.54
CD44-207ENST00000425428 VAT1LQ9HCJ6 419 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 EMILIN3Q9NT22 766 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 MAD2L2Q9UI95 211 aa11.7□□□□□ -0.54
CD44-207ENST00000425428 PALM3A6NDB9 673 aaPredicted RBP11.69□□□□□ -0.54
CD44-207ENST00000425428 PLA2G6O60733 806 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 GOLGA8HP0CJ92 632 aa11.69□□□□□ -0.54
CD44-207ENST00000425428 IFNAR1P17181 557 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms