RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 EXOC5O00471 708 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 PGRP06401 933 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 FGRP09769 529 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 RLBP1P12271 317 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 JAG1P78504 1218 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 SAFB2Q14151 953 aaKnown RBP eCLIP4.79□□□□□ -1.64
SF3B1-205ENST00000424674 ODR4Q5SWX8 454 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 CDKAL1Q5VV42 579 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 C11orf96Q7Z7L8 435 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 ZSWIM9Q86XI8 627 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 FAM9BQ8IZU0 186 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 TMEM40Q8WWA1 233 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 COX4I2Q96KJ9 171 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 HSPA12BQ96MM6 686 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 DPH2Q9BQC3 489 aaPredicted RBP4.79□□□□□ -1.64
SF3B1-205ENST00000424674 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.79□□□□□ -1.649e-7■■□□□ 12
SF3B1-205ENST00000424674 NOC4LQ9BVI4 516 aaKnown RBP4.79□□□□□ -1.64
SF3B1-205ENST00000424674 CARS2Q9HA77 564 aaKnown RBP4.79□□□□□ -1.64
SF3B1-205ENST00000424674 ATP13A1Q9HD20 1204 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 SEMA3GQ9NS98 782 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 LMCD1Q9NZU5 365 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 SWAP70Q9UH65 585 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 TCEAL9Q9UHQ7 104 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 TLR6Q9Y2C9 796 aa4.79□□□□□ -1.64
SF3B1-205ENST00000424674 CNTNAP4Q9C0A0 1308 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 TFE3P19532 575 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 CYP7A1P22680 504 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 KIR3DL1P43629 444 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 ST13P50502 369 aaKnown RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 RPL6Q02878 288 aaKnown RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 PDE4BQ07343 736 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 FZD5Q13467 585 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 UBE4AQ14139 1066 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 ZNF648Q5T619 568 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 MRPL41Q8IXM3 137 aaKnown RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 RIN3Q8TB24 985 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 STAG1Q8WVM7 1258 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 JARID2Q92833 1246 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 NAP1L4Q99733 375 aaKnown RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 TJP2Q9UDY2 1190 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 CTNND2Q9UQB3 1225 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 ST14Q9Y5Y6 855 aa4.78□□□□□ -1.64
SF3B1-205ENST00000424674 ARID1BQ8NFD5 2236 aaPredicted RBP4.78□□□□□ -1.64
SF3B1-205ENST00000424674 KIF3BO15066 747 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 FARP2O94887 1054 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-205ENST00000424674 CBX7O95931 251 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 VIL1P09327 827 aaKnown RBP4.77□□□□□ -1.65
SF3B1-205ENST00000424674 ETV3P41162 512 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 AMPD3Q01432 767 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 HDAC1Q13547 482 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-205ENST00000424674 TAF1CQ15572 869 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-205ENST00000424674 KCNMB1Q16558 191 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 DIEXFQ68CQ4 756 aaKnown RBP4.77□□□□□ -1.65
SF3B1-205ENST00000424674 SLC6A19Q695T7 634 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 THAP5Q7Z6K1 395 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 CDH24Q86UP0 819 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 AMOTL1Q8IY63 956 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 TMEM87BQ96K49 555 aa4.77□□□□□ -1.65
SF3B1-205ENST00000424674 DDX41Q9UJV9 622 aaKnown RBP4.77□□□□□ -1.65
SF3B1-205ENST00000424674 MINDY4BA8MYZ0 360 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 AFMP43652 599 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 TNK2Q07912 1038 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 SERINC3Q13530 473 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 ZRSR2Q15696 482 aaKnown RBP4.76□□□□□ -1.65
SF3B1-205ENST00000424674 ARSHQ5FYA8 562 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 PCGF5Q86SE9 256 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 CCDC84Q86UT8 332 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-205ENST00000424674 FERMT3Q86UX7 667 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 PHC3Q8NDX5 983 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 PIWIL2Q8TC59 973 aaKnown RBP4.76□□□□□ -1.65
SF3B1-205ENST00000424674 ACSF2Q96CM8 615 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-205ENST00000424674 CRELD1Q96HD1 420 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 FBXO9Q9UK97 447 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-205ENST00000424674 ADAM30Q9UKF2 790 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 RPS6KL1Q9Y6S9 549 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 USP31Q70CQ4 1352 aa4.76□□□□□ -1.65
SF3B1-205ENST00000424674 CCDC189A1A4V9 331 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 ZNF503-AS2A6NEH8 195 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 LRRC10BA6NIK2 292 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 ANP32CO43423 234 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 CDC45O75419 566 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 BPNT1O95861 308 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 POU5F1BQ06416 359 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 PKN1Q16512 942 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 USP48Q86UV5 1035 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 MCATQ8IVS2 390 aaKnown RBP4.75□□□□□ -1.65
SF3B1-205ENST00000424674 KSR1Q8IVT5 923 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 CNPY4Q8N129 248 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 DNAJB8Q8NHS0 232 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 UBE2FQ969M7 185 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 RNPC3Q96LT9 517 aaKnown RBP4.75□□□□□ -1.65
SF3B1-205ENST00000424674 ALPK1Q96QP1 1244 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 COPRSQ9NQ92 184 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 FAM53CQ9NYF3 392 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.75□□□□□ -1.65
SF3B1-205ENST00000424674 SIRPGQ9P1W8 387 aa4.75□□□□□ -1.65
SF3B1-205ENST00000424674 CCER2I3L3R5 266 aa4.74□□□□□ -1.65
SF3B1-205ENST00000424674 CAND2O75155 1236 aa4.74□□□□□ -1.65
SF3B1-205ENST00000424674 BDNFP23560 247 aa4.74□□□□□ -1.65
SF3B1-205ENST00000424674 GDNFP39905 211 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms