RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 KRT86O43790 486 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 APPP05067 770 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 RRAGBQ5VZM2 374 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 NBPF10Q6P3W6 841 aaKnown RBP12.01□□□□□ -0.49
USP54-204ENST00000422491 CRACR2BQ8N4Y2 399 aaPredicted RBP12.01□□□□□ -0.49
USP54-204ENST00000422491 NBPF15Q8N660 670 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 SHISA4Q96DD7 197 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 TACC3Q9Y6A5 838 aa12.01□□□□□ -0.49
USP54-204ENST00000422491 A6NNZ2 444 aa12□□□□□ -0.49
USP54-204ENST00000422491 MYO1FO00160 1098 aa12□□□□□ -0.49
USP54-204ENST00000422491 OPA1O60313 960 aa12□□□□□ -0.49
USP54-204ENST00000422491 GPTP24298 496 aa12□□□□□ -0.49
USP54-204ENST00000422491 KRT83P78385 493 aa12□□□□□ -0.49
USP54-204ENST00000422491 EZH2Q15910 746 aaKnown RBP12□□□□□ -0.49
USP54-204ENST00000422491 MEA1Q16626 185 aa12□□□□□ -0.49
USP54-204ENST00000422491 RTN1Q16799 776 aa12□□□□□ -0.49
USP54-204ENST00000422491 TUBB8Q3ZCM7 444 aa12□□□□□ -0.49
USP54-204ENST00000422491 IQCEQ6IPM2 695 aa12□□□□□ -0.49
USP54-204ENST00000422491 TTLL7Q6ZT98 887 aa12□□□□□ -0.49
USP54-204ENST00000422491 B4GALNT4Q76KP1 1039 aa12□□□□□ -0.49
USP54-204ENST00000422491 ZNF572Q7Z3I7 529 aaPredicted RBP12□□□□□ -0.49
USP54-204ENST00000422491 IRF2BP1Q8IU81 584 aa12□□□□□ -0.49
USP54-204ENST00000422491 HDAC7Q8WUI4 952 aa12□□□□□ -0.49
USP54-204ENST00000422491 STAMQ92783 540 aa12□□□□□ -0.49
USP54-204ENST00000422491 AIDAQ96BJ3 306 aa12□□□□□ -0.49
USP54-204ENST00000422491 ARL8AQ96BM9 186 aa12□□□□□ -0.49
USP54-204ENST00000422491 DMGDHQ9UI17 866 aaKnown RBP12□□□□□ -0.49
USP54-204ENST00000422491 CAPN11Q9UMQ6 739 aa12□□□□□ -0.49
USP54-204ENST00000422491 LUC7L2Q9Y383 392 aaKnown RBP12□□□□□ -0.49
USP54-204ENST00000422491 NDUFAB1O14561 156 aa12□□□□□ -0.49
USP54-204ENST00000422491 MEFVO15553 781 aaPredicted RBP12□□□□□ -0.49
USP54-204ENST00000422491 KIF1CO43896 1103 aaKnown RBP12□□□□□ -0.49
USP54-204ENST00000422491 CREG2Q8IUH2 290 aa12□□□□□ -0.49
USP54-204ENST00000422491 CMTR1Q8N1G2 835 aaKnown RBP12□□□□□ -0.49
USP54-204ENST00000422491 MB21D1Q8N884 522 aa12□□□□□ -0.49
USP54-204ENST00000422491 TSEN2Q8NCE0 465 aaKnown RBP12□□□□□ -0.49
USP54-204ENST00000422491 NELFBQ8WX92 580 aa12□□□□□ -0.49
USP54-204ENST00000422491 HINFPQ9BQA5 517 aa12□□□□□ -0.49
USP54-204ENST00000422491 PAGR1Q9BTK6 254 aa12□□□□□ -0.49
USP54-204ENST00000422491 FBXO3Q9UK99 471 aa12□□□□□ -0.49
USP54-204ENST00000422491 A0A1W2PQC6 194 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 ZEB2O60315 1214 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 ITIH3Q06033 890 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 PDCLQ13371 301 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 UBE3CQ15386 1083 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 EARS2Q5JPH6 523 aaKnown RBP11.99□□□□□ -0.49
USP54-204ENST00000422491 KIAA1328Q86T90 577 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 SPATS2Q86XZ4 545 aaKnown RBP11.99□□□□□ -0.49
USP54-204ENST00000422491 CCDC82Q8N4S0 544 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 ZNF507Q8TCN5 953 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 FERMT2Q96AC1 680 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 MTRQ99707 1265 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 BLZF1Q9H2G9 400 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 VPS54Q9P1Q0 977 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 WNT7AO00755 349 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 A1BGP04217 495 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 IDEP14735 1019 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 CCDC70Q6NSX1 233 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 FNBP4Q8N3X1 1017 aaPredicted RBP11.99□□□□□ -0.49
USP54-204ENST00000422491 STAG1Q8WVM7 1258 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 JPH2Q9BR39 696 aaPredicted RBP11.99□□□□□ -0.49
USP54-204ENST00000422491 LRRC1Q9BTT6 524 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 SUFUQ9UMX1 484 aa11.99□□□□□ -0.49
USP54-204ENST00000422491 CHD4Q14839 1912 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 MYH13Q9UKX3 1938 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 RGPD5Q99666 1765 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 LGALS16A8MUM7 142 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 ALX1Q15699 326 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 CCDC57Q2TAC2 916 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 ALS2CLQ60I27 953 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 YTHDF3Q7Z739 585 aaKnown RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 OTUD6BQ8N6M0 293 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 TACO1Q9BSH4 297 aaKnown RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 EPB41L4AQ9HCS5 686 aaPredicted RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 JADE2Q9NQC1 790 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 DUSP10Q9Y6W6 482 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 ZNF532Q9HCE3 1301 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 TIAM2Q8IVF5 1701 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 DISP2A7MBM2 1401 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 C21orf2O43822 256 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 PARP1P09874 1014 aaKnown RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 EPHB4P54760 987 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 CTDSPL2Q05D32 466 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 ZNF658Q5TYW1 1059 aaPredicted RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 PDXDC2PQ6P474 469 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 EMBQ6PCB8 327 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 RAPGEF4Q8WZA2 1011 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 CAVIN3Q969G5 261 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 STRBPQ96SI9 672 aaKnown RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 TTYH3Q9C0H2 523 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 PIH1D3Q9NQM4 214 aaKnown RBP11.98□□□□□ -0.49
USP54-204ENST00000422491 SNX12Q9UMY4 172 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 RIC1Q4ADV7 1423 aa11.98□□□□□ -0.49
USP54-204ENST00000422491 TCRBV5S4A2TA0A5A2 114 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 KIAA0754O94854 1291 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 CEBPAP49715 358 aaPredicted RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 SETQ01105 290 aaPredicted RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 IQSEC3Q9UPP2 1182 aaPredicted RBP11.97□□□□□ -0.49
USP54-204ENST00000422491 H0YHG0 523 aa11.97□□□□□ -0.49
USP54-204ENST00000422491 H7C1D1 291 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms