RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 GNPTABQ3T906 1256 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 NBPF12Q5TAG4 269 aaPredicted RBP6.82□□□□□ -1.32
VPS54-204ENST00000416400 VSIG10LQ86VR7 867 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 DTX1Q86Y01 620 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 KRTAP1-3Q8IUG1 177 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 SPACA3Q8IXA5 215 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 TMEM192Q8IY95 271 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 DTWD2Q8NBA8 298 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 ZNF512BQ96KM6 892 aaPredicted RBP6.82□□□□□ -1.32
VPS54-204ENST00000416400 PUS7Q96PZ0 661 aaKnown RBP6.82□□□□□ -1.32
VPS54-204ENST00000416400 PLAGL2Q9UPG8 496 aa6.82□□□□□ -1.32
VPS54-204ENST00000416400 KIAA1324LA8MWY0 1029 aaPredicted RBP6.81□□□□□ -1.32
VPS54-204ENST00000416400 H3BS24 57 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 PDPK1O15530 556 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 LRRN2O75325 713 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 DDAH1O94760 285 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 MED26O95402 600 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 GJB6O95452 261 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 WNT11O96014 354 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 TP53P04637 393 aaPredicted RBP6.81□□□□□ -1.32
VPS54-204ENST00000416400 SLC7A5Q01650 507 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 RASGRF1Q13972 1273 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 ZYXQ15942 572 aaKnown RBP6.81□□□□□ -1.32
VPS54-204ENST00000416400 NKPD1Q17RQ9 610 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 THAP5Q7Z6K1 395 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 FLCNQ8NFG4 579 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 HSPA12BQ96MM6 686 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 ZSWIM5Q9P217 1185 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 PCDHB12Q9Y5F1 795 aa6.81□□□□□ -1.32
VPS54-204ENST00000416400 HYAL3O43820 417 aaPredicted RBP6.8□□□□□ -1.32
VPS54-204ENST00000416400 HMGB1P09429 215 aaKnown RBP6.8□□□□□ -1.32
VPS54-204ENST00000416400 NCLP19338 710 aaKnown RBP6.8□□□□□ -1.32
VPS54-204ENST00000416400 IKZF1Q13422 519 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 TCEAL1Q15170 157 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 C6orf15Q6UXA7 325 aaPredicted RBP6.8□□□□□ -1.32
VPS54-204ENST00000416400 MICAL1Q8TDZ2 1067 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 UBE2FQ969M7 185 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 Q96M66 194 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 ZFP64Q9NPA5 681 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 FAM86C1Q9NVL1 165 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 ZNF214Q9UL59 606 aaPredicted RBP6.8□□□□□ -1.32
VPS54-204ENST00000416400 U3KQE9 123 aa6.8□□□□□ -1.32
VPS54-204ENST00000416400 SSU72P8A0A1W2PR75 194 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 ANKRD62A6NC57 917 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 B2RBV5 119 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 CLSTN1O94985 981 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 PRNPP04156 253 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 NAT2P11245 290 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 HSP90B1P14625 803 aaKnown RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 SPINK2P20155 84 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 NMIQ13287 307 aaPredicted RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 AUHQ13825 339 aaKnown RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 NBPF9Q3BBW0 867 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 NOL9Q5SY16 702 aaKnown RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 ARTNQ5T4W7 220 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 ANGEL2Q5VTE6 544 aaKnown RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 TDRD10Q5VZ19 366 aaKnown RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 VHLLQ6RSH7 139 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 NBPF11Q86T75 865 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 TP53INP2Q8IXH6 220 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 FAM178BQ8IXR5 827 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 BCL7CQ8WUZ0 217 aaPredicted RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 SYTL4Q96C24 671 aaPredicted RBP6.79□□□□□ -1.32
VPS54-204ENST00000416400 GPR62Q9BZJ7 368 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 CCDC39Q9UFE4 941 aa6.79□□□□□ -1.32
VPS54-204ENST00000416400 HSD3B2P26439 372 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 TPP2P29144 1249 aaPredicted RBP6.78□□□□□ -1.32
VPS54-204ENST00000416400 BNIP3Q12983 259 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 NCAPHQ15003 741 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 MTERF2Q49AM1 385 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 EGFLAMQ63HQ2 1017 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 HEATR6Q6AI08 1181 aaKnown RBP6.78□□□□□ -1.32
VPS54-204ENST00000416400 C7orf61Q8IZ16 206 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 AGBL5Q8NDL9 886 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 ENOX1Q8TC92 643 aaKnown RBP6.78□□□□□ -1.32
VPS54-204ENST00000416400 VWCEQ96DN2 955 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 RNPC3Q96LT9 517 aaKnown RBP6.78□□□□□ -1.32
VPS54-204ENST00000416400 DNAJC7Q99615 494 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 DSCC1Q9BVC3 393 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 GBP3Q9H0R5 595 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 PCDHB10Q9UN67 800 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 ST14Q9Y5Y6 855 aa6.78□□□□□ -1.32
VPS54-204ENST00000416400 PITPNM2Q9BZ72 1349 aa6.77□□□□□ -1.32
VPS54-204ENST00000416400 LTBP3Q9NS15 1303 aa6.77□□□□□ -1.32
VPS54-204ENST00000416400 C9IYK1 514 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 ENPP3O14638 875 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 KIAA1211LQ6NV74 962 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 TMPRSS7Q7RTY8 843 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 ADAT2Q7Z6V5 191 aaKnown RBP6.77□□□□□ -1.33
VPS54-204ENST00000416400 SH3TC2Q8TF17 1288 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 ATP13A1Q9HD20 1204 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 DUSP13Q9UII6 198 aa6.77□□□□□ -1.33
VPS54-204ENST00000416400 ITGA4P13612 1032 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 LTKP29376 864 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 ZNF662Q6ZS27 426 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 EEPD1Q7L9B9 569 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 TSPYL5Q86VY4 417 aaPredicted RBP6.76□□□□□ -1.33
VPS54-204ENST00000416400 CREG2Q8IUH2 290 aa6.76□□□□□ -1.33
VPS54-204ENST00000416400 ST13P5Q8NFI4 369 aaPredicted RBP6.76□□□□□ -1.33
VPS54-204ENST00000416400 PRDM14Q9GZV8 571 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms