RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 C17orf53Q8N3J3 647 aaPredicted RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 PPHLN1Q8NEY8 458 aaKnown RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 CCDC34Q96HJ3 373 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 MS4A4AQ96JQ5 239 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 CCDC8Q9H0W5 538 aaPredicted RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 NGRNQ9NPE2 291 aaKnown RBP10.73□□□□□ -0.69
SNHG3-201ENST00000413987 ATP8A1Q9Y2Q0 1164 aa10.73□□□□□ -0.69
SNHG3-201ENST00000413987 CDHR2Q9BYE9 1310 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SHTN1A0MZ66 631 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 TSPAN7P41732 249 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 UBE2HP62256 183 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 DAB2P98082 770 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 CCDC57Q2TAC2 916 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 PARP10Q53GL7 1025 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 ATG9AQ7Z3C6 839 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SPIRE2Q8WWL2 714 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SKA1Q96BD8 255 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 KIF1BPQ96EK5 621 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 PNPLA7Q6ZV29 1317 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SNAP23O00161 211 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 PDE8AO60658 829 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 LDHBP07195 334 aaKnown RBP10.72□□□□□ -0.69
SNHG3-201ENST00000413987 CSF1RP07333 972 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SLFN14P0C7P3 912 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 CASQ1P31415 396 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 NCBP1Q09161 790 aaKnown RBP10.72□□□□□ -0.69
SNHG3-201ENST00000413987 TMC7Q7Z402 723 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 AACSQ86V21 672 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 EAF2Q96CJ1 260 aaPredicted RBP10.72□□□□□ -0.69
SNHG3-201ENST00000413987 PAWRQ96IZ0 340 aaKnown RBP10.72□□□□□ -0.69
SNHG3-201ENST00000413987 TIGD1Q96MW7 591 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SERINC2Q96SA4 455 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 TSPYL1Q9H0U9 437 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 COPRSQ9NQ92 184 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 SNTG2Q9NY99 539 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 CALCOCO1Q9P1Z2 691 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 GTF2A1LQ9UNN4 478 aa10.72□□□□□ -0.69
SNHG3-201ENST00000413987 MYH3P11055 1940 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 NAT2P11245 290 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 PIK3CAP42336 1068 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 PDE1AP54750 535 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 DDR1Q08345 913 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 IFIT5Q13325 482 aaKnown RBP10.71□□□□□ -0.69
SNHG3-201ENST00000413987 HYIQ5T013 277 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 RSBN1LQ6PCB5 846 aaPredicted RBP10.71□□□□□ -0.69
SNHG3-201ENST00000413987 CHAMP1Q96JM3 812 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 SELENOOQ9BVL4 669 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 PLA2G12BQ9BX93 195 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 DAAM1Q9Y4D1 1078 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 ATP6V1DQ9Y5K8 247 aa10.71□□□□□ -0.69
SNHG3-201ENST00000413987 SALL3Q9BXA9 1300 aa10.71□□□□□ -0.7
SNHG3-201ENST00000413987 CARMIL3Q8ND23 1372 aa10.71□□□□□ -0.7
SNHG3-201ENST00000413987 GADD45BO75293 160 aaPredicted RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 FOSL1P15407 271 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 PPM1FP49593 454 aaPredicted RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 FAM133BQ5BKY9 247 aaKnown RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 SPECC1Q5M775 1068 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 KRT222Q8N1A0 295 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 TTC8Q8TAM2 541 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 TMEM87BQ96K49 555 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 FAM126AQ9BYI3 521 aaPredicted RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 CASZ1Q86V15 1759 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 TNRC6CQ9HCJ0 1690 aaKnown RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 ESYT3A0FGR9 886 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 WTIPA6NIX2 430 aaPredicted RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 PES1O00541 588 aaKnown RBP10.7□□□□□ -0.7
SNHG3-201ENST00000413987 TERF2Q15554 542 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 SWI5Q1ZZU3 235 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 CATIPQ7Z7H3 387 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 KCNF1Q9H3M0 494 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 OSBPL3Q9H4L5 887 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 PYCARDQ9ULZ3 195 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 SPEF2Q9C093 1822 aa10.7□□□□□ -0.7
SNHG3-201ENST00000413987 COL24A1Q17RW2 1714 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 TIMM10P62072 90 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 FMR1Q06787 632 aaKnown RBP eCLIP10.69□□□□□ -0.77e-47■■■■■ 392
SNHG3-201ENST00000413987 ANO1Q5XXA6 986 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 ANKRD42Q8N9B4 389 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 DDX12PQ92771 950 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 RIC8AQ9NPQ8 531 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 CDV3Q9UKY7 258 aaKnown RBP10.69□□□□□ -0.7
SNHG3-201ENST00000413987 hCG_1984214I3L0E3 225 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 EYA2O00167 538 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 KCNJ4P48050 445 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 ZNF131P52739 623 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 SLC15A2Q16348 729 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 PRPF38BQ5VTL8 546 aaKnown RBP10.69□□□□□ -0.7
SNHG3-201ENST00000413987 IQCEQ6IPM2 695 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 LDHAL6AQ6ZMR3 332 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 CLASRPQ8N2M8 674 aaKnown RBP10.69□□□□□ -0.7
SNHG3-201ENST00000413987 FUCA2Q9BTY2 467 aa10.69□□□□□ -0.7
SNHG3-201ENST00000413987 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.69□□□□□ -0.7
SNHG3-201ENST00000413987 RANBP17Q9H2T7 1088 aaKnown RBP10.69□□□□□ -0.7
SNHG3-201ENST00000413987 ANKRD18BA2A2Z9 1011 aa10.68□□□□□ -0.7
SNHG3-201ENST00000413987 FAM221BA6H8Z2 402 aa10.68□□□□□ -0.7
SNHG3-201ENST00000413987 TCEA3O75764 348 aa10.68□□□□□ -0.7
SNHG3-201ENST00000413987 IFIT2P09913 472 aaKnown RBP10.68□□□□□ -0.7
SNHG3-201ENST00000413987 BAG6P46379 1132 aa10.68□□□□□ -0.7
SNHG3-201ENST00000413987 IRX5P78411 483 aaPredicted RBP10.68□□□□□ -0.7
SNHG3-201ENST00000413987 MTMR3Q13615 1198 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms