RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CCDC93Q567U6 631 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 KRT40Q6A162 431 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 MCF2L2Q86YR7 1114 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC170Q8IYT3 715 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 ANKRD35Q8N283 1001 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 TDRD7Q8NHU6 1098 aaKnown RBP6.71□□□□□ -1.34
SCN1A-203ENST00000409050 EFCC1Q9HA90 598 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 PARP3Q9Y6F1 533 aa6.71□□□□□ -1.34
SCN1A-203ENST00000409050 PLEKHG1Q9ULL1 1385 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ABCC2Q92887 1545 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 A0A087WUV0 522 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 FOXP2O15409 715 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 FOXO3O43524 673 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 SRGAP2BP0DMP2 458 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 CTNNA1P35221 906 aaKnown RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ARID5AQ03989 594 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ORC2Q13416 577 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 SNCBQ16143 134 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 MYSM1Q5VVJ2 828 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 EXOC4Q96A65 974 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 EPSTI1Q96J88 318 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 AZI2Q9H6S1 392 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 COL4A3BPQ9Y5P4 624 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 IPO5O00410 1097 aaKnown RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 EXOC3O60645 756 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 H2AFZP0C0S5 128 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 NR1H3Q13133 447 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 H2AFVQ71UI9 128 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 WHAMMQ8TF30 809 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 KIF2CQ99661 725 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 KIFC3Q9BVG8 833 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 C19orf44Q9H6X5 657 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 AS3MTQ9HBK9 375 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 TXLNGQ9NUQ3 528 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 DONSONQ9NYP3 566 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 CDC23Q9UJX2 597 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 BAG5Q9UL15 447 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 PPP2R5AQ15172 486 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 DDB1Q16531 1140 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 LONRF2Q1L5Z9 754 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 MTHFSDQ2M296 383 aaKnown RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 NBPF9Q3BBW0 867 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 RINT1Q6NUQ1 792 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 REXO1Q8N1G1 1221 aaKnown RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 GFM2Q969S9 779 aaKnown RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 NGLY1Q96IV0 654 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC68Q9H2F9 335 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ZMYM6O95789 1325 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC151A5D8V7 595 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 IBSPP21815 317 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 HPDP32754 393 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 RFC1P35251 1148 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 GJC1P36383 396 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ESRRGP62508 458 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 SATB1Q01826 763 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 PSMD2Q13200 908 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 SURF1Q15526 300 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 HERC4Q5GLZ8 1057 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 AP1ARQ63HQ0 302 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ARHGEF18Q6ZSZ5 1173 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 BBS5Q8N3I7 341 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 MTA3Q9BTC8 594 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 TSPYL2Q9H2G4 693 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-203ENST00000409050 MRGBPQ9NV56 204 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ATP10DQ9P241 1426 aa6.7□□□□□ -1.34
SCN1A-203ENST00000409050 ZNF233A6NK53 670 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 POLR2DO15514 142 aaKnown RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 TOM1O60784 492 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 KRT10P13645 584 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 CLASP1Q7Z460 1538 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ZBTB8OSQ8IWT0 167 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PALM2Q8IXS6 379 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 CCDC197Q8NCU1 140 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 RSAD2Q8WXG1 361 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 VPS16Q9H269 839 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 POLD1P28340 1107 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PABPC4Q13310 644 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ZNF174Q15697 407 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 AKNAD1Q5T1N1 836 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 USHBP1Q8N6Y0 703 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 KRT12Q99456 494 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 RIOK1Q9BRS2 568 aaKnown RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ANGPTL3Q9Y5C1 460 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 EIF4G3O43432 1585 aaKnown RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 M0QZ92 97 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 RLBP1P12271 317 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 TNFAIP1Q13829 316 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ELF2Q15723 593 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 TEDDM1Q5T9Z0 273 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PPP4R3CPQ6ZMV5 832 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 SEPT14Q6ZU15 432 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 FLAD1Q8NFF5 587 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 ZNF622Q969S3 477 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 NRBF2Q96F24 287 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 TESK2Q96S53 571 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 OSBPL3Q9H4L5 887 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PICK1Q9NRD5 415 aa6.69□□□□□ -1.34
SCN1A-203ENST00000409050 SPATS2LQ9NUQ6 558 aaKnown RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 DDX41Q9UJV9 622 aaKnown RBP6.69□□□□□ -1.34
SCN1A-203ENST00000409050 PA2G4Q9UQ80 394 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms