RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 AKR1B1P15121 316 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 KIF23Q02241 960 aaPredicted RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 SPAG1Q07617 926 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 RAD51AP2Q09MP3 1159 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 ARHGAP29Q52LW3 1261 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 ADALQ6DHV7 355 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 GALNT17Q6IS24 598 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 HS2ST1Q7LGA3 356 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 PGBD1Q96JS3 809 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 CLIC6Q96NY7 704 aa10.25□□□□□ -0.77
LIG4-202ENST00000405925 SCAF8Q9UPN6 1271 aaKnown RBP10.25□□□□□ -0.77
LIG4-202ENST00000405925 KIF4BQ2VIQ3 1234 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 RSBN1LQ6PCB5 846 aaPredicted RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 TMTC3Q6ZXV5 915 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 KIAA1328Q86T90 577 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 CABP7Q86V35 215 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 KIF2CQ99661 725 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 OSBPL5Q9H0X9 879 aaPredicted RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 SALL3Q9BXA9 1300 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 NT5C2P49902 561 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 USP14P54578 494 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 PDE4DQ08499 809 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 PABPC4Q13310 644 aaKnown RBP eCLIP10.24□□□□□ -0.77
LIG4-202ENST00000405925 CDC42EP5Q6NZY7 148 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 NCAPG2Q86XI2 1143 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 TMEM63CQ9P1W3 806 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 WTIPA6NIX2 430 aaPredicted RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 USP17L5A8MUK1 530 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 NOP56O00567 594 aaKnown RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 PRPF3O43395 683 aaKnown RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 GAS7O60861 476 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 PFKFB1P16118 471 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 TECP42680 631 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 IREB2P48200 963 aaKnown RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 UBXN2AP68543 259 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 MKRN3Q13064 507 aaKnown RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 RASA3Q14644 834 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 TSGA10IPQ3SY00 556 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 LRP10Q7Z4F1 713 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 CCDC65Q8IXS2 484 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 FOXP1Q9H334 677 aaPredicted RBP10.24□□□□□ -0.77
LIG4-202ENST00000405925 PCDHA7Q9UN72 937 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 PCDHA12Q9UN75 941 aa10.24□□□□□ -0.77
LIG4-202ENST00000405925 OR52Z1P0C646 297 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 EEF2P13639 858 aaKnown RBP10.23□□□□□ -0.77
LIG4-202ENST00000405925 USP8P40818 1118 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 SNAP25P60880 206 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 GLIPR1L2Q4G1C9 344 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 SYDE2Q5VT97 1194 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 MAEAQ7L5Y9 396 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 DYMQ7RTS9 669 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 ARMC9Q7Z3E5 817 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 ZSCAN30Q86W11 494 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 NEDD1Q8NHV4 660 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG4-202ENST00000405925 DISP2A7MBM2 1401 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 ARHGEF35A5YM69 484 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 ORC4O43929 436 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 MMP1P03956 469 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 XRCC6P12956 609 aaKnown RBP eCLIP10.23□□□□□ -0.77
LIG4-202ENST00000405925 ARHGEF16Q5VV41 709 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 HHIPL2Q6UWX4 724 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 CLEC10AQ8IUN9 316 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 NR1I2O75469 434 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 TRIM21P19474 475 aaKnown RBP10.23□□□□□ -0.77
LIG4-202ENST00000405925 CDC37Q16543 378 aaPredicted RBP10.23□□□□□ -0.77
LIG4-202ENST00000405925 NLRX1Q86UT6 975 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 SERTAD1Q9UHV2 236 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 PCDHA4Q9UN74 947 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 ZHX2Q9Y6X8 837 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 CDC27P30260 824 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 SPP2Q13103 211 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 KRT26Q7Z3Y9 468 aa10.23□□□□□ -0.77
LIG4-202ENST00000405925 F5H6K3 240 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 FOSP01100 380 aaPredicted RBP10.22□□□□□ -0.77
LIG4-202ENST00000405925 GMPSP49915 693 aaPredicted RBP10.22□□□□□ -0.77
LIG4-202ENST00000405925 MYL5Q02045 173 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 KLRC3Q07444 240 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 MCF2L2Q86YR7 1114 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 DNM3Q9UQ16 869 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 GPR75-ASB3A0A0A6YYF3 556 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 IGSF3O75054 1194 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 POSTNQ15063 836 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 SPA17Q15506 151 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 HERC4Q5GLZ8 1057 aaPredicted RBP10.22□□□□□ -0.77
LIG4-202ENST00000405925 SGMS1Q86VZ5 419 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 PLA2G4DQ86XP0 818 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 TBCKQ8TEA7 893 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 MTA3Q9BTC8 594 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 DDX25Q9UHL0 483 aaKnown RBP10.22□□□□□ -0.77
LIG4-202ENST00000405925 WDR19Q8NEZ3 1342 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 MRC1P22897 1456 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 GSDMDP57764 484 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 SAMD7Q7Z3H4 446 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 APOBEC3FQ8IUX4 373 aaKnown RBP10.22□□□□□ -0.77
LIG4-202ENST00000405925 TPH2Q8IWU9 490 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 BLZF1Q9H2G9 400 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 TRMT1Q9NXH9 659 aaKnown RBP10.22□□□□□ -0.77
LIG4-202ENST00000405925 RTEL1Q9NZ71 1219 aa10.22□□□□□ -0.77
LIG4-202ENST00000405925 HERC5Q9UII4 1024 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms