RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 TOP1P11387 765 aaKnown RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 TTLL12Q14166 644 aaPredicted RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 HEATR3Q7Z4Q2 680 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 ZNF287Q9HBT7 754 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 MYH4Q9Y623 1939 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 IFNAR1P17181 557 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 FAM83BQ5T0W9 1011 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 SLFN13Q68D06 897 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 FAM83AQ86UY5 434 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 ZFP91Q96JP5 570 aaPredicted RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 RBM27Q9P2N5 1060 aaKnown RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 FMNL1O95466 1100 aaPredicted RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 PARP1P09874 1014 aaKnown RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 SLC1A4P43007 532 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 TNNI2P48788 182 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 NUCB2P80303 420 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 SPP2Q13103 211 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 TMTC2Q8N394 836 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 DCPSQ96C86 337 aaKnown RBP13.55□□□□□ -0.24
SKA3-203ENST00000400018 CABP5Q9NP86 173 aa13.55□□□□□ -0.24
SKA3-203ENST00000400018 GRIN3BO60391 1043 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 PPP1R11O60927 126 aaPredicted RBP13.54□□□□□ -0.24
SKA3-203ENST00000400018 USH1GQ495M9 461 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 TMED8Q6PL24 325 aaPredicted RBP13.54□□□□□ -0.24
SKA3-203ENST00000400018 SULF1Q8IWU6 871 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 WNK4Q96J92 1243 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 WDR33Q9C0J8 1336 aaKnown RBP13.54□□□□□ -0.24
SKA3-203ENST00000400018 TMEM232C9JQI7 657 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 PCP11498 1178 aaKnown RBP13.54□□□□□ -0.24
SKA3-203ENST00000400018 MTMR2Q13614 643 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 GRM4Q14833 912 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 NAP1L5Q96NT1 182 aaPredicted RBP13.54□□□□□ -0.24
SKA3-203ENST00000400018 FEZ1Q99689 392 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 ZHX2Q9Y6X8 837 aa13.54□□□□□ -0.24
SKA3-203ENST00000400018 PALM3A6NDB9 673 aaPredicted RBP13.53□□□□□ -0.24
SKA3-203ENST00000400018 RESTQ13127 1097 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 WWC2Q6AWC2 1192 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 TMEM179Q6ZVK1 233 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 ADGRF4Q8IZF3 695 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 FBXO18Q8NFZ0 1043 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 TCP11L1Q9NUJ3 509 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 DDX49Q9Y6V7 483 aaKnown RBP13.53□□□□□ -0.24
SKA3-203ENST00000400018 RRP9O43818 475 aaKnown RBP13.53□□□□□ -0.24
SKA3-203ENST00000400018 TNFAIP1Q13829 316 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 KIFC2Q96AC6 838 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 KANSL2Q9H9L4 492 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 CIZ1Q9ULV3 898 aaPredicted RBP13.53□□□□□ -0.24
SKA3-203ENST00000400018 CLIC4Q9Y696 253 aa13.53□□□□□ -0.24
SKA3-203ENST00000400018 USP2O75604 605 aaPredicted RBP13.52□□□□□ -0.24
SKA3-203ENST00000400018 DDAH1O94760 285 aa13.52□□□□□ -0.24
SKA3-203ENST00000400018 AKAP17AQ02040 695 aaKnown RBP13.52□□□□□ -0.24
SKA3-203ENST00000400018 CCDC174Q6PII3 467 aa13.52□□□□□ -0.24
SKA3-203ENST00000400018 METTL16Q86W50 562 aaKnown RBP13.52□□□□□ -0.24
SKA3-203ENST00000400018 USP28Q96RU2 1077 aa13.52□□□□□ -0.24
SKA3-203ENST00000400018 LLPHQ9BRT6 129 aaKnown RBP13.52□□□□□ -0.24
SKA3-203ENST00000400018 ELP3Q9H9T3 547 aa13.52□□□□□ -0.24
SKA3-203ENST00000400018 HERC5Q9UII4 1024 aaKnown RBP13.52□□□□□ -0.24
SKA3-203ENST00000400018 HTTP42858 3142 aa13.52□□□□□ -0.25
SKA3-203ENST00000400018 HMGCS2P54868 508 aa13.52□□□□□ -0.25
SKA3-203ENST00000400018 DIS3L2Q8IYB7 885 aaKnown RBP13.52□□□□□ -0.25
SKA3-203ENST00000400018 TRIM22Q8IYM9 498 aa13.52□□□□□ -0.25
SKA3-203ENST00000400018 TMEM260Q9NX78 707 aa13.52□□□□□ -0.25
SKA3-203ENST00000400018 HMGN5P82970 282 aaKnown RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 GNL2Q13823 731 aaKnown RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 SPECC1Q5M775 1068 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 CPLX2Q6PUV4 134 aaKnown RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 CDCA5Q96FF9 252 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 JMJD4Q9H9V9 463 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 MKI67P46013 3256 aaKnown RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 MYH6P13533 1939 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 MARCKSP29966 332 aaPredicted RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 KIF23Q02241 960 aaPredicted RBP13.51□□□□□ -0.25
SKA3-203ENST00000400018 ZNF543Q08ER8 600 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 VGLL4Q14135 290 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 UBE2SQ16763 222 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 CCDC17Q96LX7 622 aa13.51□□□□□ -0.25
SKA3-203ENST00000400018 NPY5RQ15761 445 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 TBC1D5Q92609 795 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 ANKS1AQ92625 1134 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 KLRG1Q96E93 195 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 NPM3O75607 178 aaKnown RBP13.5□□□□□ -0.25
SKA3-203ENST00000400018 FKBP1CQ5VVH2 108 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 APOBEC3FQ8IUX4 373 aaKnown RBP13.5□□□□□ -0.25
SKA3-203ENST00000400018 GPT2Q8TD30 523 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 GJA10Q969M2 543 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 LMBRD1Q9NUN5 540 aa13.5□□□□□ -0.25
SKA3-203ENST00000400018 DEXIO95424 95 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 SCG2P13521 617 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 CPXCR1Q8N123 301 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 HOMER2Q9NSB8 354 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 RBAK-RBAKDNI3L0D1 243 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 IGSF3O75054 1194 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 NOVP48745 357 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 NLRP5P59047 1200 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 GRIN1Q05586 938 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 GRM1Q13255 1194 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 R3HDMLQ9H3Y0 253 aa13.49□□□□□ -0.25
SKA3-203ENST00000400018 BIN2Q9UBW5 565 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms