RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 PRUNE2Q8WUY3 3088 aa12.41□□□□□ -0.42
NEDD8-202ENST00000396828 ZNFX1Q9P2E3 1918 aaKnown RBP12.41□□□□□ -0.42
NEDD8-202ENST00000396828 ZNF236Q9UL36 1845 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 EEF2P13639 858 aaKnown RBP12.4□□□□□ -0.42
NEDD8-202ENST00000396828 ATN1P54259 1190 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-202ENST00000396828 ICA1Q05084 483 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 PLS1Q14651 629 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 UBE3CQ15386 1083 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 GJC2Q5T442 439 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-202ENST00000396828 TSHZ3Q63HK5 1081 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 CTR9Q6PD62 1173 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 SAMD1Q6SPF0 538 aaPredicted RBP12.4□□□□□ -0.42
NEDD8-202ENST00000396828 C16orf86Q6ZW13 317 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 DPP9Q86TI2 863 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 VCPKMTQ9H867 229 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 SLC4A4Q9Y6R1 1079 aa12.4□□□□□ -0.42
NEDD8-202ENST00000396828 FLOT1O75955 427 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 TMEM132BQ14DG7 1078 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 NCAPG2Q86XI2 1143 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 TDHQ8IZJ6 230 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 STK11IPQ8N1F8 1099 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 LPAR1Q92633 364 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 LRRCC1Q9C099 1032 aa12.39□□□□□ -0.43
NEDD8-202ENST00000396828 UBE2OQ9C0C9 1292 aaKnown RBP12.39□□□□□ -0.43
NEDD8-202ENST00000396828 SMCHD1A6NHR9 2005 aa12.38□□□□□ -0.43
NEDD8-202ENST00000396828 LRIT3Q3SXY7 679 aa12.38□□□□□ -0.43
NEDD8-202ENST00000396828 OLFML2BQ68BL8 750 aa12.38□□□□□ -0.43
NEDD8-202ENST00000396828 SHCBP1Q8NEM2 672 aa12.38□□□□□ -0.43
NEDD8-202ENST00000396828 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.38□□□□□ -0.43
NEDD8-202ENST00000396828 ARHGEF10LQ9HCE6 1279 aa12.38□□□□□ -0.43
NEDD8-202ENST00000396828 ADAMTS5Q9UNA0 930 aa12.38□□□□□ -0.43
NEDD8-202ENST00000396828 GREB1LQ9C091 1923 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-202ENST00000396828 GSG1L2A8MUP6 293 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 DNM1LO00429 736 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 STRNO43815 780 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 PGK2P07205 417 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 DEFB123Q8N688 67 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 REPS2Q8NFH8 660 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 OSBP2Q969R2 916 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 MAML3Q96JK9 1138 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 CCDC17Q96LX7 622 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 STRBPQ96SI9 672 aaKnown RBP12.37□□□□□ -0.43
NEDD8-202ENST00000396828 NUP88Q99567 741 aaPredicted RBP12.37□□□□□ -0.43
NEDD8-202ENST00000396828 LNPKQ9C0E8 428 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 MROH8Q9H579 483 aa12.37□□□□□ -0.43
NEDD8-202ENST00000396828 WDR46O15213 610 aaKnown RBP12.36□□□□□ -0.43
NEDD8-202ENST00000396828 TAL1P17542 331 aaPredicted RBP12.36□□□□□ -0.43
NEDD8-202ENST00000396828 RASA1P20936 1047 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 RTP1P59025 263 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 FAM83BQ5T0W9 1011 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 MB21D1Q8N884 522 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 ECHDC1Q9NTX5 307 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 LTBP2Q14767 1821 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 PLXNA1Q9UIW2 1896 aa12.36□□□□□ -0.43
NEDD8-202ENST00000396828 SPTBN5Q9NRC6 3674 aaKnown RBP12.35□□□□□ -0.43
NEDD8-202ENST00000396828 VWA5AO00534 786 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 SEPT4O43236 478 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 RAD21O60216 631 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 MSCO60682 206 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 MYCNP04198 464 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-202ENST00000396828 FAM47AQ5JRC9 791 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 SLC39A5Q6ZMH5 540 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 RIOX2Q8IUF8 465 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 ABRAQ8N0Z2 381 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 SLC17A8Q8NDX2 589 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 FERMT2Q96AC1 680 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 LENG1Q96BZ8 264 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-202ENST00000396828 SEC62Q99442 399 aaKnown RBP12.35□□□□□ -0.43
NEDD8-202ENST00000396828 KANSL2Q9H9L4 492 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 EPB41L4AQ9HCS5 686 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-202ENST00000396828 ZNF214Q9UL59 606 aaPredicted RBP12.35□□□□□ -0.43
NEDD8-202ENST00000396828 PPP1R9AQ9ULJ8 1098 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 ATP11BQ9Y2G3 1177 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 RIPK3Q9Y572 518 aa12.35□□□□□ -0.43
NEDD8-202ENST00000396828 MINDY4BA8MYZ0 360 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 M0R2C6 588 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 FCER1AP12319 257 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 ADCYAP1R1P41586 468 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 LRRC41Q15345 812 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 ZNF792Q3KQV3 632 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 GPR153Q6NV75 609 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 SH3RF1Q7Z6J0 888 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 KBTBD3Q8NAB2 608 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 OTUD7AQ8TE49 926 aaPredicted RBP12.34□□□□□ -0.43
NEDD8-202ENST00000396828 MMP19Q99542 508 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 SH2D4AQ9H788 454 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 MTMR10Q9NXD2 777 aa12.34□□□□□ -0.43
NEDD8-202ENST00000396828 F5H6K3 240 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 PRDM1O75626 825 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 ITGB8P26012 769 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 STAT3P40763 770 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 KLRC3Q07444 240 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 TRIM60Q495X7 471 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 SBK1Q52WX2 424 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 ZSCAN25Q6NSZ9 544 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 AMOTL1Q8IY63 956 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 ARRDC4Q8NCT1 418 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 GOPCQ9HD26 462 aa12.33□□□□□ -0.44
NEDD8-202ENST00000396828 ARPP21Q9UBL0 812 aaPredicted RBP12.33□□□□□ -0.44
NEDD8-202ENST00000396828 CUL9Q8IWT3 2517 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms