RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 DDX4Q9NQI0 724 aaKnown RBP17.08■□□□□ 0.33
CBX3-202ENST00000396386 SWAP70Q9UH65 585 aa17.08■□□□□ 0.33
CBX3-202ENST00000396386 MYH4Q9Y623 1939 aa17.08■□□□□ 0.32
CBX3-202ENST00000396386 KLRF2D3W0D1 207 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 CYTH3O43739 400 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 PTGS1P23219 599 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 HEATR3Q7Z4Q2 680 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 CNKSR1Q969H4 720 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 CCDC34Q96HJ3 373 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 OSBPL5Q9H0X9 879 aaPredicted RBP17.07■□□□□ 0.32
CBX3-202ENST00000396386 BARHL2Q9NY43 387 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 SERTAD1Q9UHV2 236 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 STXBP3O00186 592 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 IKBKBO14920 756 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 ACTN4O43707 911 aaKnown RBP17.07■□□□□ 0.32
CBX3-202ENST00000396386 HLA-DOAP06340 250 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 CRKP46108 304 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 CDC42EP5Q6NZY7 148 aa17.07■□□□□ 0.32
CBX3-202ENST00000396386 ECE2O60344 883 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 GOLGA8HP0CJ92 632 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 SMARCA1P28370 1054 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 MDM2Q00987 491 aaPredicted RBP17.06■□□□□ 0.32
CBX3-202ENST00000396386 PTGDRQ13258 359 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 STRIP1Q5VSL9 837 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 RASGRP2Q7LDG7 609 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 NAP1L5Q96NT1 182 aaPredicted RBP17.06■□□□□ 0.32
CBX3-202ENST00000396386 SERPINB13Q9UIV8 391 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 PCDHA5Q9Y5H7 936 aa17.06■□□□□ 0.32
CBX3-202ENST00000396386 CCDC194A0A1B0GVG4 234 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 EZH2Q15910 746 aaKnown RBP17.05■□□□□ 0.32
CBX3-202ENST00000396386 ISM2Q6H9L7 571 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 APOBEC3HQ6NTF7 200 aaKnown RBP17.05■□□□□ 0.32
CBX3-202ENST00000396386 TYW1BQ6NUM6 668 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 CCDC186Q7Z3E2 898 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 DEFB132Q7Z7B7 95 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 PDILTQ8N807 584 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 CCDC12Q8WUD4 166 aaPredicted RBP17.05■□□□□ 0.32
CBX3-202ENST00000396386 SYMPKQ92797 1274 aaKnown RBP17.05■□□□□ 0.32
CBX3-202ENST00000396386 ZDHHC15Q96MV8 337 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 MTMR4Q9NYA4 1195 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 IGKV6D-41A0A0C4DH26 115 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 M0R2N6 131 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 ADAMTS3O15072 1205 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 FOXN1O15353 648 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 AKR1B1P15121 316 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 CHRNA5P30532 468 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 MCM7P33993 719 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 USP49Q70CQ1 688 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 SMARCE1Q969G3 411 aa17.05■□□□□ 0.32
CBX3-202ENST00000396386 RRP36Q96EU6 259 aaKnown RBP17.05■□□□□ 0.32
CBX3-202ENST00000396386 SEC63Q9UGP8 760 aaKnown RBP17.05■□□□□ 0.32
CBX3-202ENST00000396386 VWA3AA6NCI4 1184 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 PRR29P0C7W0 189 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 HDLBPQ00341 1268 aaKnown RBP17.04■□□□□ 0.32
CBX3-202ENST00000396386 MYL5Q02045 173 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 NCAPHQ15003 741 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 DACT2Q5SW24 774 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 NT5DC1Q5TFE4 455 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 USP17L2Q6R6M4 530 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 TRIML1Q8N9V2 468 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 DHX58Q96C10 678 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 CAMKK2Q96RR4 588 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 EHD4Q9H223 541 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 ZNF219Q9P2Y4 722 aaPredicted RBP17.04■□□□□ 0.32
CBX3-202ENST00000396386 MAN1B1Q9UKM7 699 aa17.04■□□□□ 0.32
CBX3-202ENST00000396386 NAPAP54920 295 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 EN1Q05925 392 aaPredicted RBP17.03■□□□□ 0.32
CBX3-202ENST00000396386 ASPRV1Q53RT3 343 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 ARL6IP4Q66PJ3 421 aaKnown RBP17.03■□□□□ 0.32
CBX3-202ENST00000396386 KIAA0825Q8IV33 1275 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 FOXP4Q8IVH2 680 aaPredicted RBP17.03■□□□□ 0.32
CBX3-202ENST00000396386 RASGRP4Q8TDF6 673 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 MRIQ9BWK5 157 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 NRBP1Q9UHY1 535 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 DACH1Q9UI36 760 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 PCDHA6Q9UN73 950 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 PCDHA8Q9Y5H6 950 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 ARFGEF1Q9Y6D6 1849 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 PDHBP11177 359 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 SHMT1P34896 483 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 NOLC1Q14978 699 aaKnown RBP eCLIP17.03■□□□□ 0.326e-7■■■□□ 15.8
CBX3-202ENST00000396386 LRRC47Q8N1G4 583 aaKnown RBP17.03■□□□□ 0.32
CBX3-202ENST00000396386 SUPT20HQ8NEM7 779 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 EPSTI1Q96J88 318 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 PYM1Q9BRP8 204 aaKnown RBP17.03■□□□□ 0.32
CBX3-202ENST00000396386 PYCARDQ9ULZ3 195 aa17.03■□□□□ 0.32
CBX3-202ENST00000396386 A0A087X0B3 334 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 USP17L5A8MUK1 530 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 hCG_1984214I3L0E3 225 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 SMC2O95347 1197 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 TTLL1O95922 423 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 SLFN14P0C7P3 912 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 PPP4R3BQ5MIZ7 849 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 CC2D2BQ6DHV5 1058 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 HOMER1Q86YM7 354 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 GRAMD1CQ8IYS0 662 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 ZNF713Q8N859 430 aaPredicted RBP17.02■□□□□ 0.32
CBX3-202ENST00000396386 KIAA1524Q8TCG1 905 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 ZMYND12Q9H0C1 365 aa17.02■□□□□ 0.32
CBX3-202ENST00000396386 CPVLQ9H3G5 476 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms