RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 MECOMQ03112 1051 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 PPP2R5EQ16537 467 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 PRR5LQ6MZQ0 368 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CDC37L1Q7L3B6 337 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 SULF1Q8IWU6 871 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 METTL14Q9HCE5 456 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 NUMA1Q14980 2115 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 STRCQ7RTU9 1775 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 MYH1P12882 1939 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 EEF1GP26641 437 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ADORA1P30542 326 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 PAFAH1B1P43034 410 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 KIF5AQ12840 1032 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 DALRD3Q5D0E6 543 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 PUS3Q9BZE2 481 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 LOXHD1Q8IVV2 1947 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 F5P12259 2224 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 A6NNZ2 444 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 TUBB8Q3ZCM7 444 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 INTS5Q6P9B9 1019 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CCDC144CPQ8IYA2 1237 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 TGFBRAP1Q8WUH2 860 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 SDR42E1Q8WUS8 393 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 PCDHA1Q9Y5I3 950 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CICQ96RK0 1608 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ESYT2A0FGR8 921 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CASP7P55210 303 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 FKBP3Q00688 224 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CHST3Q7LGC8 479 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 SEC31BQ9NQW1 1179 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 TLR7Q9NYK1 1049 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 POLR2DO15514 142 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ENTPD3O75355 529 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CRY2Q49AN0 593 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 EDC3Q96F86 508 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 VEZTQ9HBM0 779 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ONECUT3O60422 494 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 BTDP43251 543 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 MTIF2P46199 727 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ALCAMQ13740 583 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CELF1Q92879 486 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 PSTPIP2Q9H939 334 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 UBN2Q6ZU65 1347 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ABCB5Q2M3G0 1257 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 SPECC1LQ69YQ0 1117 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 KLHL10Q6JEL2 608 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 CDAN1Q8IWY9 1227 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 AGBL3Q8NEM8 1001 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 DNM3Q9UQ16 869 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 SRPRBQ9Y5M8 271 aaKnown RBP3.8□□□□□ -1.8
VPS13C-203ENST00000395896 ATRNO75882 1429 aa3.8□□□□□ -1.8
VPS13C-203ENST00000395896 SLFN14P0C7P3 912 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 TSGA10Q9BZW7 698 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 TTC12Q9H892 705 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 LRWD1Q9UFC0 647 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 EXOC7Q9UPT5 735 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FRMD4BQ9Y2L6 1034 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 SLIT2O94813 1529 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 VWA3AA6NCI4 1184 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 PSMD2Q13200 908 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 PPP1R2P3Q6NXS1 205 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 CCDC129Q6ZRS4 1044 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 ZHX3Q9H4I2 956 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FBXO40Q9UH90 709 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FSD2A1L4K1 749 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 CCNT1O60563 726 aaKnown RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 U2AF2P26368 475 aaKnown RBP eCLIP3.79□□□□□ -1.82e-6■■■□□ 17.8
VPS13C-203ENST00000395896 DNM2P50570 870 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 NAP1L1P55209 391 aaKnown RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 TDRD7Q8NHU6 1098 aaKnown RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 PDCL3Q9H2J4 239 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 USP40Q9NVE5 1235 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FAM184BQ9ULE4 1060 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 DYNC1I1O14576 645 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 MARCKSP29966 332 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 COL18A1P39060 1754 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FOSBP53539 338 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 APOBEC3FQ8IUX4 373 aaKnown RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 KIAA0825Q8IV33 1275 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 CCDC42Q96M95 316 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 KIF2CQ99661 725 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 GPR75-ASB3A0A0A6YYF3 556 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 A0A1B0GVL5 298 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 SMCO2A6NFE2 343 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 MCM7P33993 719 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 TBC1D9BQ66K14 1250 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FAM83AQ86UY5 434 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 LMBR1Q8WVP7 490 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FAM20AQ96MK3 541 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 FAM186AA6NE01 2351 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 MARF1Q9Y4F3 1742 aaKnown RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 AKAP11Q9UKA4 1901 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 OR52Z1P0C646 297 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 SNX16P57768 344 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 PTGDRQ13258 359 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 OTUD6AQ7L8S5 288 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 TMTC1Q8IUR5 882 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 GIMAP8Q8ND71 665 aaPredicted RBP3.79□□□□□ -1.8
VPS13C-203ENST00000395896 USP28Q96RU2 1077 aa3.79□□□□□ -1.8
VPS13C-203ENST00000395896 PNMA3Q9UL41 463 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms