RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 VGLL4Q14135 290 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 MAP3K11Q16584 847 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.47■□□□□ 0.39
SCAF11-204ENST00000395454 TMEM179Q6ZVK1 233 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 ANKRD13AQ8IZ07 590 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 SCYL3Q8IZE3 742 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 FANCBQ8NB91 859 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 PGBD1Q96JS3 809 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 MYL10Q9BUA6 226 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 DDAH1O94760 285 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 SEPT2Q15019 361 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 NEDD1Q8NHV4 660 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 WASF1Q92558 559 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 USP28Q96RU2 1077 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 ALG1Q9BT22 464 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 PANK2Q9BZ23 570 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 PICK1Q9NRD5 415 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 RTEL1Q9NZ71 1219 aa17.47■□□□□ 0.39
SCAF11-204ENST00000395454 DOCK1Q14185 1865 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 PPFIA3O75145 1194 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 CALM1P0DP23 149 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 CALM2P0DP24 149 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 CALM3P0DP25 149 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 TROAPQ12815 778 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 CLEC10AQ8IUN9 316 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 ANKS1AQ92625 1134 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.46■□□□□ 0.39
SCAF11-204ENST00000395454 POLR3EQ9NVU0 708 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 STX8Q9UNK0 236 aa17.46■□□□□ 0.39
SCAF11-204ENST00000395454 PLIN4Q96Q06 1357 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 GUCY1A2P33402 732 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 GUCY1B3Q02153 619 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 SSRP1Q08945 709 aaKnown RBP17.45■□□□□ 0.38
SCAF11-204ENST00000395454 FUT2Q10981 343 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 CCDC84Q86UT8 332 aaPredicted RBP17.45■□□□□ 0.38
SCAF11-204ENST00000395454 PHKBQ93100 1093 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 CEP95Q96GE4 821 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 CLMNQ96JQ2 1002 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 IL17RBQ9NRM6 502 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 U2AF2P26368 475 aaKnown RBP eCLIP17.45■□□□□ 0.385e-8■■■■■ 30.4
SCAF11-204ENST00000395454 NASPP49321 788 aaPredicted RBP17.45■□□□□ 0.38
SCAF11-204ENST00000395454 ATP2B2Q01814 1243 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 IFIT1BQ5T764 474 aaKnown RBP17.45■□□□□ 0.38
SCAF11-204ENST00000395454 OTUD7BQ6GQQ9 843 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 CCDC144CPQ8IYA2 1237 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 RNF26Q9BY78 433 aaPredicted RBP17.45■□□□□ 0.38
SCAF11-204ENST00000395454 RBSNQ9H1K0 784 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 ELP3Q9H9T3 547 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 SNCAIPQ9Y6H5 919 aa17.45■□□□□ 0.38
SCAF11-204ENST00000395454 KIF28PB7ZC32 967 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 DEXIO95424 95 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 YEATS4O95619 227 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 HUNKP57058 714 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 ICA1Q05084 483 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 NOL9Q5SY16 702 aaKnown RBP17.44■□□□□ 0.38
SCAF11-204ENST00000395454 MYSM1Q5VVJ2 828 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 KRT40Q6A162 431 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 RBM43Q6ZSC3 357 aaKnown RBP17.44■□□□□ 0.38
SCAF11-204ENST00000395454 AIFM3Q96NN9 605 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 FUCA2Q9BTY2 467 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 KANSL2Q9H9L4 492 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 TCP11L1Q9NUJ3 509 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 RBM28Q9NW13 759 aaKnown RBP17.44■□□□□ 0.38
SCAF11-204ENST00000395454 MTMR4Q9NYA4 1195 aa17.44■□□□□ 0.38
SCAF11-204ENST00000395454 GREB1LQ9C091 1923 aaPredicted RBP17.44■□□□□ 0.38
SCAF11-204ENST00000395454 TMEM88BA6NKF7 163 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 PTPRAP18433 802 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 LIG1P18858 919 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 FOSBP53539 338 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 LDLRAD1Q5T700 205 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 RCSD1Q6JBY9 416 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 CATIPQ7Z7H3 387 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 TRIM22Q8IYM9 498 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 GJB4Q9NTQ9 266 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 GINM1Q9NU53 330 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 DDX19AQ9NUU7 478 aaKnown RBP17.43■□□□□ 0.38
SCAF11-204ENST00000395454 ABT1Q9ULW3 272 aaKnown RBP17.43■□□□□ 0.38
SCAF11-204ENST00000395454 IGKV6D-41A0A0C4DH26 115 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 CCDC178Q5BJE1 867 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 SAPCD2Q86UD0 394 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 DGKHQ86XP1 1220 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 MAP3K14Q99558 947 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 SLC26A6Q9BXS9 759 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 TSPY26PQ9H489 355 aa17.43■□□□□ 0.38
SCAF11-204ENST00000395454 USP17L5A8MUK1 530 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 TTLL1O95922 423 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 EEF2P13639 858 aaKnown RBP17.42■□□□□ 0.38
SCAF11-204ENST00000395454 CNKSR2Q8WXI2 1034 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 SLC10A4Q96EP9 437 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 FTOQ9C0B1 505 aaKnown RBP eCLIP17.42■□□□□ 0.38
SCAF11-204ENST00000395454 CLIP2Q9UDT6 1046 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 ZHX2Q9Y6X8 837 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 CEP350Q5VT06 3117 aa17.42■□□□□ 0.38
SCAF11-204ENST00000395454 GOLGA6L4A6NEF3 574 aa17.41■□□□□ 0.38
SCAF11-204ENST00000395454 UNCXA6NJT0 531 aa17.41■□□□□ 0.38
SCAF11-204ENST00000395454 LINC00301Q8NCQ3 95 aa17.41■□□□□ 0.38
SCAF11-204ENST00000395454 OTUD5Q96G74 571 aa17.41■□□□□ 0.38
SCAF11-204ENST00000395454 MYH4Q9Y623 1939 aa17.41■□□□□ 0.38
SCAF11-204ENST00000395454 A0A1W2PQ27 194 aa17.41■□□□□ 0.38
SCAF11-204ENST00000395454 A0A1W2PQ64 194 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms