RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 SNX17Q15036 470 aa25.47■■□□□ 1.67
TRAF4-203ENST00000394925 C9orf50Q5SZB4 431 aa25.47■■□□□ 1.67
TRAF4-203ENST00000394925 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.47■■□□□ 1.675e-7■■■■■ 32.1
TRAF4-203ENST00000394925 CCDC17Q96LX7 622 aa25.47■■□□□ 1.67
TRAF4-203ENST00000394925 COL11A1P12107 1806 aaPredicted RBP25.47■■□□□ 1.67
TRAF4-203ENST00000394925 SLC25A27O95847 323 aa25.46■■□□□ 1.67
TRAF4-203ENST00000394925 C12orf60Q5U649 245 aa25.46■■□□□ 1.67
TRAF4-203ENST00000394925 PDLIM7Q9NR12 457 aa25.46■■□□□ 1.67
TRAF4-203ENST00000394925 HMMRO75330 724 aa25.45■■□□□ 1.66
TRAF4-203ENST00000394925 SH3RF1Q7Z6J0 888 aa25.45■■□□□ 1.66
TRAF4-203ENST00000394925 RPAP2Q8IXW5 612 aaPredicted RBP25.45■■□□□ 1.66
TRAF4-203ENST00000394925 AMOTL1Q8IY63 956 aa25.45■■□□□ 1.66
TRAF4-203ENST00000394925 MMP19Q99542 508 aa25.45■■□□□ 1.66
TRAF4-203ENST00000394925 COL25A1Q9BXS0 654 aaPredicted RBP25.45■■□□□ 1.66
TRAF4-203ENST00000394925 FBXO28Q9NVF7 368 aa25.45■■□□□ 1.66
TRAF4-203ENST00000394925 TRIM43BA6NCK2 446 aa25.44■■□□□ 1.66
TRAF4-203ENST00000394925 USP17L12C9JPN9 530 aa25.44■■□□□ 1.66
TRAF4-203ENST00000394925 USP17L21D6R901 530 aa25.44■■□□□ 1.66
TRAF4-203ENST00000394925 CHGBP05060 677 aa25.44■■□□□ 1.66
TRAF4-203ENST00000394925 PGK2P07205 417 aa25.44■■□□□ 1.66
TRAF4-203ENST00000394925 EEF2P13639 858 aaKnown RBP25.44■■□□□ 1.66
TRAF4-203ENST00000394925 SIRT2Q8IXJ6 389 aa25.44■■□□□ 1.66
TRAF4-203ENST00000394925 TRIM43Q96BQ3 446 aaPredicted RBP25.44■■□□□ 1.66
TRAF4-203ENST00000394925 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.44■■□□□ 1.662e-8■■□□□ 13.1
TRAF4-203ENST00000394925 RAD21O60216 631 aa25.43■■□□□ 1.66
TRAF4-203ENST00000394925 TLE2Q04725 743 aa25.43■■□□□ 1.66
TRAF4-203ENST00000394925 C16orf86Q6ZW13 317 aa25.43■■□□□ 1.66
TRAF4-203ENST00000394925 XPNPEP3Q9NQH7 507 aa25.43■■□□□ 1.66
TRAF4-203ENST00000394925 ADAMTS5Q9UNA0 930 aa25.43■■□□□ 1.66
TRAF4-203ENST00000394925 EYSQ5T1H1 3165 aa25.43■■□□□ 1.66
TRAF4-203ENST00000394925 RAB11FIP3O75154 756 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 RARBP10826 455 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 ATP5JP18859 108 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 KCTD2Q14681 263 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 C1orf53Q5VUE5 145 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 RIOX2Q8IUF8 465 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 DDRGK1Q96HY6 314 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 CDX2Q99626 313 aaPredicted RBP25.42■■□□□ 1.66
TRAF4-203ENST00000394925 KANSL2Q9H9L4 492 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 PLXNA1Q9UIW2 1896 aa25.42■■□□□ 1.66
TRAF4-203ENST00000394925 PGK1P00558 417 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 MS4A1P11836 297 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 STAT3P40763 770 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 HAUS7Q99871 368 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 TINF2Q9BSI4 451 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 SEMA6BQ9H3T3 888 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 NRBP1Q9UHY1 535 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 PHF24Q9UPV7 400 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 SLC4A4Q9Y6R1 1079 aa25.41■■□□□ 1.66
TRAF4-203ENST00000394925 MYH7P12883 1935 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 VWA5AO00534 786 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 TAL1P17542 331 aaPredicted RBP25.4■■□□□ 1.66
TRAF4-203ENST00000394925 ZNF792Q3KQV3 632 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 RNF180Q86T96 592 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 GOPCQ9HD26 462 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 PPP1R9AQ9ULJ8 1098 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 COG6Q9Y2V7 657 aa25.4■■□□□ 1.66
TRAF4-203ENST00000394925 UBE3CQ15386 1083 aa25.39■■□□□ 1.66
TRAF4-203ENST00000394925 FAM83BQ5T0W9 1011 aa25.39■■□□□ 1.66
TRAF4-203ENST00000394925 CTR9Q6PD62 1173 aa25.39■■□□□ 1.66
TRAF4-203ENST00000394925 ZBTB40Q9NUA8 1239 aa25.39■■□□□ 1.66
TRAF4-203ENST00000394925 ZNF214Q9UL59 606 aaPredicted RBP25.39■■□□□ 1.66
TRAF4-203ENST00000394925 DIS3Q9Y2L1 958 aaKnown RBP25.39■■□□□ 1.66
TRAF4-203ENST00000394925 TACC3Q9Y6A5 838 aa25.39■■□□□ 1.66
TRAF4-203ENST00000394925 PRUNE2Q8WUY3 3088 aa25.38■■□□□ 1.65
TRAF4-203ENST00000394925 SMAD3P84022 425 aaKnown RBP25.38■■□□□ 1.65
TRAF4-203ENST00000394925 DDX19BQ9UMR2 479 aa25.38■■□□□ 1.65
TRAF4-203ENST00000394925 CLTBP09497 229 aa25.37■■□□□ 1.65
TRAF4-203ENST00000394925 ITGB8P26012 769 aa25.37■■□□□ 1.65
TRAF4-203ENST00000394925 REPS2Q8NFH8 660 aa25.37■■□□□ 1.65
TRAF4-203ENST00000394925 LENG1Q96BZ8 264 aaPredicted RBP25.37■■□□□ 1.65
TRAF4-203ENST00000394925 PUS7LQ9H0K6 701 aaKnown RBP25.37■■□□□ 1.65
TRAF4-203ENST00000394925 ZBED9Q6R2W3 1325 aa25.37■■□□□ 1.65
TRAF4-203ENST00000394925 VCANP13611 3396 aa25.36■■□□□ 1.65
TRAF4-203ENST00000394925 A0A1W2PQ45 241 aaPredicted RBP25.36■■□□□ 1.65
TRAF4-203ENST00000394925 A0A1W2PQY0 241 aa25.36■■□□□ 1.65
TRAF4-203ENST00000394925 PQBP1O60828 265 aaKnown RBP25.36■■□□□ 1.65
TRAF4-203ENST00000394925 ZNF865P0CJ78 1059 aaPredicted RBP25.36■■□□□ 1.65
TRAF4-203ENST00000394925 AKR1A1P14550 325 aa25.36■■□□□ 1.65
TRAF4-203ENST00000394925 COPB2P35606 906 aa25.36■■□□□ 1.65
TRAF4-203ENST00000394925 TTYH1Q9H313 450 aaPredicted RBP25.36■■□□□ 1.65
TRAF4-203ENST00000394925 ZSCAN25Q6NSZ9 544 aa25.35■■□□□ 1.65
TRAF4-203ENST00000394925 MIER1Q8N108 512 aa25.35■■□□□ 1.65
TRAF4-203ENST00000394925 STK11IPQ8N1F8 1099 aa25.35■■□□□ 1.65
TRAF4-203ENST00000394925 MAFAQ8NHW3 353 aaPredicted RBP25.35■■□□□ 1.65
TRAF4-203ENST00000394925 MYLIPQ8WY64 445 aa25.35■■□□□ 1.65
TRAF4-203ENST00000394925 NUP88Q99567 741 aaPredicted RBP25.35■■□□□ 1.65
TRAF4-203ENST00000394925 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.35■■□□□ 1.65
TRAF4-203ENST00000394925 CNPY2Q9Y2B0 182 aa25.35■■□□□ 1.65
TRAF4-203ENST00000394925 CDH23Q9H251 3354 aa25.35■■□□□ 1.65
TRAF4-203ENST00000394925 RAG1P15918 1043 aa25.34■■□□□ 1.65
TRAF4-203ENST00000394925 EPHB4P54760 987 aa25.34■■□□□ 1.65
TRAF4-203ENST00000394925 RNPC3Q96LT9 517 aaKnown RBP25.34■■□□□ 1.65
TRAF4-203ENST00000394925 ROBO3Q96MS0 1386 aa25.33■■□□□ 1.65
TRAF4-203ENST00000394925 KIAA0355O15063 1070 aa25.33■■□□□ 1.65
TRAF4-203ENST00000394925 SLF1Q9BQI6 1058 aa25.33■■□□□ 1.65
TRAF4-203ENST00000394925 TMEM39AQ9NV64 488 aa25.33■■□□□ 1.65
TRAF4-203ENST00000394925 ARPP21Q9UBL0 812 aaPredicted RBP25.33■■□□□ 1.65
TRAF4-203ENST00000394925 ADAMTS4O75173 837 aa25.32■■□□□ 1.64
TRAF4-203ENST00000394925 SLC4A3P48751 1232 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms