RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 A0A087WUV0 522 aaPredicted RBP14.67□□□□□ -0.06
USP49-203ENST00000394253 NBNO60934 754 aa14.67□□□□□ -0.06
USP49-203ENST00000394253 CCT5P48643 541 aa14.67□□□□□ -0.06
USP49-203ENST00000394253 ARMC2Q8NEN0 867 aa14.67□□□□□ -0.06
USP49-203ENST00000394253 DKC1O60832 514 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP49-203ENST00000394253 HELLSQ9NRZ9 838 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 KIF17Q9P2E2 1029 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 RPS6KC1Q96S38 1066 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 DBF4Q9UBU7 674 aaPredicted RBP14.66□□□□□ -0.06
USP49-203ENST00000394253 C4BPBP20851 252 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 NCAPH2Q6IBW4 605 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 HECW1Q76N89 1606 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 PIK3R5Q8WYR1 880 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 WARS2Q9UGM6 360 aaKnown RBP14.66□□□□□ -0.06
USP49-203ENST00000394253 ANKRD50Q9ULJ7 1429 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 PYGMP11217 842 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 RNF169Q8NCN4 708 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 CCDC8Q9H0W5 538 aaPredicted RBP14.66□□□□□ -0.06
USP49-203ENST00000394253 SPDYE16A6NNV3 312 aaPredicted RBP14.66□□□□□ -0.06
USP49-203ENST00000394253 GUCY2CP25092 1073 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 PRPSAP1Q14558 356 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 SPDYE2Q495Y8 402 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 PLEKHM3Q6ZWE6 761 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 MLKLQ8NB16 471 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 DCDC2Q9UHG0 476 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 WDR97A6NE52 1622 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 SPAG7O75391 227 aa14.66□□□□□ -0.06
USP49-203ENST00000394253 BACH1O14867 736 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 SLC4A1P02730 911 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 SNX5Q9Y5X3 404 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 TMEM259Q4ZIN3 620 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 ZC3H12BQ5HYM0 836 aaKnown RBP14.65□□□□□ -0.06
USP49-203ENST00000394253 LZICQ8WZA0 190 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 DCTN3O75935 186 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 BASP1P80723 227 aaKnown RBP14.65□□□□□ -0.06
USP49-203ENST00000394253 RAPH1Q70E73 1250 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 BRF1Q92994 677 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 RANBP1P43487 201 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 TMED10P49755 219 aaKnown RBP14.65□□□□□ -0.06
USP49-203ENST00000394253 RWDD2BP57060 319 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 MTBPQ96DY7 904 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 ATP11BQ9Y2G3 1177 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 PIK3R4Q99570 1358 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 VWA3AA6NCI4 1184 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 H0Y626 953 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 TRIM16O95361 564 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 IFNB1P01574 187 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 ATF2P15336 505 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 OATP04181 439 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 KLHL30Q0D2K2 578 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 GRAMD1BQ3KR37 738 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 CEP55Q53EZ4 464 aa14.65□□□□□ -0.06
USP49-203ENST00000394253 STX18Q9P2W9 335 aaKnown RBP14.65□□□□□ -0.06
USP49-203ENST00000394253 TRMT112Q9UI30 125 aaKnown RBP14.65□□□□□ -0.06
USP49-203ENST00000394253 STAM2O75886 525 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 CCDC85BQ15834 202 aaPredicted RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 CHCHD3Q9NX63 227 aaKnown RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 TRPC6Q9Y210 931 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 GOLGA8RI6L899 631 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 POLD1P28340 1107 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 NSFP46459 744 aaKnown RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 COG4Q9H9E3 785 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 TMEM191CA6NGB0 347 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 TMEM191BP0C7N4 346 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 RARSP54136 660 aaKnown RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 KLC3Q6P597 504 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 NAF1Q96HR8 494 aaKnown RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 MYD88Q99836 296 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 RAB20Q9NX57 234 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 ESRRBO95718 433 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 DEAF1O75398 565 aaPredicted RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 CHGBP05060 677 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 ZNF75DP51815 510 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 A0A1B0GVL5 298 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 F8W8V4 182 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 PSMC1P62191 440 aaKnown RBP14.64□□□□□ -0.07
USP49-203ENST00000394253 TRAF7Q6Q0C0 670 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 FLCNQ8NFG4 579 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 SSH1Q8WYL5 1049 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 USTQ9Y2C2 406 aa14.64□□□□□ -0.07
USP49-203ENST00000394253 ATP8B1O43520 1251 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 C10orf88Q9H8K7 445 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 MAPK13O15264 365 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 IRX1P78414 480 aaPredicted RBP14.63□□□□□ -0.07
USP49-203ENST00000394253 BEND3Q5T5X7 828 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 HACE1Q8IYU2 909 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 PSMB7Q99436 277 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 GINS4Q9BRT9 223 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 STRIP2Q9ULQ0 834 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 ZNF263O14978 683 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 MMEP08473 750 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 BRDTQ58F21 947 aaPredicted RBP14.63□□□□□ -0.07
USP49-203ENST00000394253 TEDDM1Q5T9Z0 273 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 RTEL1-TNFRSF6BF6WH68 1400 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 CCNT1O60563 726 aaKnown RBP14.63□□□□□ -0.07
USP49-203ENST00000394253 PATL1Q86TB9 770 aaKnown RBP14.63□□□□□ -0.07
USP49-203ENST00000394253 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP49-203ENST00000394253 SF3A3Q12874 501 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP49-203ENST00000394253 TJAP1Q5JTD0 557 aa14.63□□□□□ -0.07
USP49-203ENST00000394253 OLA1Q9NTK5 396 aaKnown RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms