RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MYH6P13533 1939 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 BAZ2AQ9UIF9 1905 aaKnown RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 CCDC66A2RUB6 948 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 CYP2D6P10635 497 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF772Q68DY9 489 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF444Q8N0Y2 327 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 MTMR7Q9Y216 660 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 MORC2Q9Y6X9 1032 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-204ENST00000392003 TAF1P21675 1872 aa10.94□□□□□ -0.66
COL6A3-204ENST00000392003 CNTNAP5Q8WYK1 1306 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 FAM205CA6NFA0 338 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 ACTN4O43707 911 aaKnown RBP10.93□□□□□ -0.66
COL6A3-204ENST00000392003 TRAPPC10P48553 1259 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 TFAP4Q01664 338 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 MORC3Q14149 939 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 VSTM4Q8IW00 320 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 GRAMD1CQ8IYS0 662 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 SRBD1Q8N5C6 995 aaKnown RBP10.93□□□□□ -0.66
COL6A3-204ENST00000392003 EFCC1Q9HA90 598 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 CACNA1SQ13698 1873 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 VWA3AA6NCI4 1184 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 RIMBP2O15034 1052 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 NMT2O60551 498 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 ERCC5P28715 1186 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-204ENST00000392003 TXLNAP40222 546 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF827Q17R98 1081 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 HSP90AA4PQ58FG1 418 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 NT5DC1Q5TFE4 455 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 DPF2Q92785 391 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 SYMPKQ92797 1274 aaKnown RBP10.93□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF287Q9HBT7 754 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 BBOX1O75936 387 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 USP17L8P0C7I0 530 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 PLCD1P51178 756 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 PIK3AP1Q6ZUJ8 805 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 USP49Q70CQ1 688 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 EPSTI1Q96J88 318 aa10.93□□□□□ -0.66
COL6A3-204ENST00000392003 COL4A1P02462 1669 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF831Q5JPB2 1677 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 ZSCAN12O43309 604 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 ATP2B4P23634 1241 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 SARSP49591 514 aaKnown RBP10.92□□□□□ -0.66
COL6A3-204ENST00000392003 PTGDRQ13258 359 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 FILIP1LQ4L180 1135 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 KLHL10Q6JEL2 608 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 DNAJC14Q6Y2X3 702 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-204ENST00000392003 NLGN1Q8N2Q7 840 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 IQUBQ8NA54 791 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 PIK3R5Q8WYR1 880 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 PPP1R13BQ96KQ4 1090 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 TSPY3P0CV98 308 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 TSPY8P0CW00 308 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 TM4SF1P30408 202 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 PFKFB3Q16875 520 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-204ENST00000392003 E4F1Q66K89 784 aaPredicted RBP10.92□□□□□ -0.66
COL6A3-204ENST00000392003 DGKHQ86XP1 1220 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 TRMT44Q8IYL2 757 aaKnown RBP10.92□□□□□ -0.66
COL6A3-204ENST00000392003 PARP3Q9Y6F1 533 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 MCM7P33993 719 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 GPSM2P81274 684 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 PNMA1Q8ND90 353 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 HSD3B7Q9H2F3 369 aa10.92□□□□□ -0.66
COL6A3-204ENST00000392003 CCDC194A0A1B0GVG4 234 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 BMP6P22004 513 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 DIXDC1Q155Q3 683 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 C12orf60Q5U649 245 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 MSL1Q68DK7 614 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 RASSF8Q8NHQ8 419 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 PAGE5Q96GU1 130 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 GSDMAQ96QA5 445 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 ZC3H12CQ9C0D7 883 aaKnown RBP10.91□□□□□ -0.66
COL6A3-204ENST00000392003 ZNF219Q9P2Y4 722 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-204ENST00000392003 SCN7AQ01118 1682 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 TMEM232C9JQI7 657 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 SLU7O95391 586 aaKnown RBP10.91□□□□□ -0.66
COL6A3-204ENST00000392003 ATP2C1P98194 919 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-204ENST00000392003 EARS2Q5JPH6 523 aaKnown RBP10.91□□□□□ -0.66
COL6A3-204ENST00000392003 SPECC1LQ69YQ0 1117 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 BLIDQ8IZY5 108 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 CCDC148Q8NFR7 591 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 ANKRD7Q92527 254 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 MYH13Q9UKX3 1938 aa10.91□□□□□ -0.66
COL6A3-204ENST00000392003 ARHGAP6O43182 974 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 FMR1Q06787 632 aaKnown RBP eCLIP10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SYT10Q6XYQ8 523 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 FCHSD1Q86WN1 690 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 ANKRD20A12PQ8NF67 263 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SYNRGQ9UMZ2 1314 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 F8W031 263 aaPredicted RBP10.9□□□□□ -0.66
COL6A3-204ENST00000392003 RXRBP28702 533 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 NCBP1Q09161 790 aaKnown RBP10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SPATA1Q5VX52 437 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SLF2Q8IX21 1173 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 TGFBRAP1Q8WUH2 860 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 ERO1AQ96HE7 468 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 SH3GLB2Q9NR46 395 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 STX8Q9UNK0 236 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 TPM1P09493 284 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 RAD51AP2Q09MP3 1159 aa10.9□□□□□ -0.66
COL6A3-204ENST00000392003 MFSD14BQ5SR56 506 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms