RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PRPSAP1Q14558 356 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 DBN1Q16643 649 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 RINT1Q6NUQ1 792 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 NSMFQ6X4W1 530 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 KLHL14Q9P2G3 628 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 NFE2L3Q9Y4A8 694 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 GSTA1P08263 222 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 GSTA2P09210 222 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ITKQ08881 620 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 GLG1Q92896 1179 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 CCDC87Q9NVE4 849 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 GOLGA8KD6RF30 607 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 S100BP04271 92 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 LIG4P49917 911 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 PDE6CP51160 858 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ZNF790Q6PG37 636 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 NCOA5Q9HCD5 579 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ZNF518AQ6AHZ1 1483 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ELF2Q15723 593 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 LONRF3Q496Y0 759 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 SMCR8Q8TEV9 937 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 U2AF1L4Q8WU68 220 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 CCDC68Q9H2F9 335 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ATP8A2Q9NTI2 1148 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 CTTNBP2Q8WZ74 1663 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 CTNNA1P35221 906 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 TMCO4Q5TGY1 634 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 SLF1Q9BQI6 1058 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ST7Q9NRC1 585 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 SAR1BQ9Y6B6 198 aa14.07□□□□□ -0.16
CCDC88C-204ENST00000389857 ARHGAP42A6NI28 874 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 PIK3C2GO75747 1445 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 GCP02774 474 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 RAD51AP2Q09MP3 1159 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 HOXB7P09629 217 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 COG7P83436 770 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 C2CD5Q86YS7 1000 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 RUNDC3BQ96NL0 473 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 PSMB7Q99436 277 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 HOMER3Q9NSC5 361 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 BTG4Q9NY30 223 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 C1orf112Q9NSG2 853 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 DDX41Q9UJV9 622 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 ESYT2A0FGR8 921 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 CPA1P15085 419 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 LMNB1P20700 586 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 ADCY8P40145 1251 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 CCDC93Q567U6 631 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 TSPYL6Q8N831 410 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 ANKRD42Q8N9B4 389 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 TGFBRAP1Q8WUH2 860 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM193BQ96PV7 902 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 MLXIPQ9HAP2 919 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 SEPT10Q9P0V9 454 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 PRAG1Q86YV5 1406 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 INPP1P49441 399 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 TCP10Q12799 353 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 PSPC1Q8WXF1 523 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 EYA1Q99502 592 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 ADPGKQ9BRR6 497 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 STK38LQ9Y2H1 464 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 CSADQ9Y600 493 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 PARD3Q8TEW0 1356 aa14.06□□□□□ -0.16
CCDC88C-204ENST00000389857 GABPB1Q06547 395 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 WHAMMP3Q1A5X7 153 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 SCYL2Q6P3W7 929 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 GPBP1Q86WP2 473 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 SPATS2Q86XZ4 545 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 KBTBD3Q8NAB2 608 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 BBOF1Q8ND07 529 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 PHKBQ93100 1093 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 DACT3Q96B18 629 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 PSDA5PKW4 1024 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 POLR2BP30876 1174 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 LRMPQ12912 555 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM71BQ8TC56 605 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 PNMA2Q9UL42 364 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 KRIT1O00522 736 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 OAS2P29728 719 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 TNFAIP1Q13829 316 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 KIF22Q14807 665 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 DLGAP5Q15398 846 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 ZNF532Q9HCE3 1301 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 CYP2J2P51589 502 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 KRT40Q6A162 431 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 MYOCDQ8IZQ8 938 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 EFCC1Q9HA90 598 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 FAM207AQ9NSI2 230 aaPredicted RBP14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 SMCO2A6NFE2 343 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 BLZF1Q9H2G9 400 aa14.05□□□□□ -0.16
CCDC88C-204ENST00000389857 JADE1Q6IE81 842 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 EIF3CLB5ME19 914 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 KCNJ18B7U540 433 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 DMP1Q13316 513 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 KCNJ12Q14500 433 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 MMS19Q96T76 1030 aa14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 EIF3CQ99613 913 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 TSPYL2Q9H2G4 693 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-204ENST00000389857 H7C1D1 291 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms