RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 SLIT2O94813 1529 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 POLR2DO15514 142 aaKnown RBP16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 PLCB4Q15147 1175 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 FILIP1LQ4L180 1135 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 TTMPQ5BVD1 217 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 H7C1W4 665 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 PRC1O43663 620 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 ZEB2O60315 1214 aa16.45■□□□□ 0.22
VPS9D1-201ENST00000389386 PDE2AO00408 941 aaPredicted RBP16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 RTN2O75298 545 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 CEP85LQ5SZL2 805 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 CCDC13Q8IYE1 715 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 RRP36Q96EU6 259 aaKnown RBP16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 EPN1Q9Y6I3 576 aaPredicted RBP16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 BCL9LQ86UU0 1499 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 CALRP27797 417 aaKnown RBP16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 NAA35Q5VZE5 725 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 FMNL3Q8IVF7 1028 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 STK11IPQ8N1F8 1099 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 MARCH10Q8NA82 808 aaPredicted RBP16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 SLC40A1Q9NP59 571 aa16.44■□□□□ 0.22
VPS9D1-201ENST00000389386 NRAPQ86VF7 1730 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 SEMA3EO15041 775 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 CDC25AP30304 524 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 STX17P56962 302 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 CUL4BQ13620 913 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 NAIF1Q69YI7 327 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 FAM89AQ96GI7 184 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 HAUS4Q9H6D7 363 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 DDX20Q9UHI6 824 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 NDUFA10O95299 355 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 CD44P16070 742 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 GRIN1Q05586 938 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 JAKMIP2Q96AA8 810 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 CHP1Q99653 195 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 EPN3Q9H201 632 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 SLC24A3Q9HC58 644 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 TOGARAM1Q9Y4F4 1720 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 KCPQ6ZWJ8 1503 aa16.43■□□□□ 0.22
VPS9D1-201ENST00000389386 MAST3O60307 1309 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 ECM2O94769 699 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 RNF187Q5TA31 235 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 ALS2CLQ60I27 953 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 ATG9AQ7Z3C6 839 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 MB21D2Q8IYB1 491 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 HINFPQ9BQA5 517 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 SYNRGQ9UMZ2 1314 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 LSP1P33241 339 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 ANTXR2P58335 489 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 KLHL10Q6JEL2 608 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 TRIM6Q9C030 488 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 PAG1Q9NWQ8 432 aa16.42■□□□□ 0.22
VPS9D1-201ENST00000389386 ACTN4O43707 911 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 ZNF473Q8WTR7 871 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 CENPHQ9H3R5 247 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 RBM28Q9NW13 759 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 GGA2Q9UJY4 613 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 ZNF185O15231 689 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 KRT9P35527 623 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 IRX1P78414 480 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 KANK3Q6NY19 840 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 TLDC1Q6P9B6 456 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 TSEN2Q8NCE0 465 aaKnown RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 CAGE1Q8TC20 777 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 MAGEC3Q8TD91 643 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 NUP88Q99567 741 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 FBXO2Q9UK22 296 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 SH3BP1Q9Y3L3 701 aa16.41■□□□□ 0.22
VPS9D1-201ENST00000389386 IBSPP21815 317 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 PTPREP23469 700 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 ATP1A2P50993 1020 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 HAND2P61296 217 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 C2orf54Q08AI8 447 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 SEMA3FQ13275 785 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 FAM228AQ86W67 206 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 HDAC7Q8WUI4 952 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 SPATA31A6Q5VVP1 1343 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 KCNQ2O43526 872 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 CCT6AP40227 531 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 SNCBQ16143 134 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 TICAM2Q86XR7 235 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 CEP57Q86XR8 500 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 FNBP4Q8N3X1 1017 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 SH2D3CQ8N5H7 860 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 TFR2Q9UP52 801 aa16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 THRAP3Q9Y2W1 955 aaKnown RBP16.4■□□□□ 0.22
VPS9D1-201ENST00000389386 PDHBP11177 359 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 CDR1P51861 262 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 HERVK_113P62684 666 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 DRP2Q13474 957 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 EZH2Q15910 746 aaKnown RBP16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 CCDC122Q5T0U0 273 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 EMC10Q5UCC4 262 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 C6orf89Q6UWU4 347 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 KDM7AQ6ZMT4 941 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 PARP9Q8IXQ6 854 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 MMGT1Q8N4V1 131 aa16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 RNPC3Q96LT9 517 aaKnown RBP16.39■□□□□ 0.22
VPS9D1-201ENST00000389386 DMGDHQ9UI17 866 aaKnown RBP16.39■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms