RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 NDUFAB1O14561 156 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 SEMA3EO15041 775 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 EIF3HO15372 352 aaKnown RBP eCLIP17.81■□□□□ 0.44
CKAP4-201ENST00000378026 CYP27B1O15528 508 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 LIFRP42702 1097 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 MFSD6Q6ZSS7 791 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 LRRC1Q9BTT6 524 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 EPB41L4AQ9HCS5 686 aaPredicted RBP17.81■□□□□ 0.44
CKAP4-201ENST00000378026 XDHP47989 1333 aa17.81■□□□□ 0.44
CKAP4-201ENST00000378026 CXCR5P32302 372 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 LDHAL6AQ6ZMR3 332 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 TEX2Q8IWB9 1127 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 IFNL3Q8IZI9 196 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 SECISBP2LQ93073 1101 aaKnown RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 PCMTD1Q96MG8 357 aaPredicted RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 CEP89Q96ST8 783 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 ERICH2A1L162 156 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 KRT86O43790 486 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 MBD4O95243 580 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 IFIT5Q13325 482 aaKnown RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 TCIRG1Q13488 830 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 PAPD7Q5XG87 772 aaKnown RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 SHISA4Q96DD7 197 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 RUFY1Q96T51 708 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 JPH2Q9BR39 696 aaPredicted RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 AGPAT5Q9NUQ2 364 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 EHD2Q9NZN4 543 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 MST1RQ04912 1400 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 TARSL2A2RTX5 802 aaKnown RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 SWT1Q5T5J6 900 aaKnown RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 WDR59Q6PJI9 974 aa17.8■□□□□ 0.44
CKAP4-201ENST00000378026 STRBPQ96SI9 672 aaKnown RBP17.8■□□□□ 0.44
CKAP4-201ENST00000378026 GRIN2DO15399 1336 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 KLK7P49862 253 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 HELBQ8NG08 1087 aaPredicted RBP17.79■□□□□ 0.44
CKAP4-201ENST00000378026 FAM184BQ9ULE4 1060 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 TBC1D2BQ9UPU7 963 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 IPO7O95373 1038 aaKnown RBP17.79■□□□□ 0.44
CKAP4-201ENST00000378026 PARP1P09874 1014 aaKnown RBP17.79■□□□□ 0.44
CKAP4-201ENST00000378026 TDO2P48775 406 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 TRIM14Q14142 442 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 CCDC70Q6NSX1 233 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 THEMISQ8N1K5 641 aaPredicted RBP17.79■□□□□ 0.44
CKAP4-201ENST00000378026 CNNM1Q9NRU3 951 aa17.79■□□□□ 0.44
CKAP4-201ENST00000378026 PRCPP42785 496 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 PHKA1P46020 1223 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 SPAG1Q07617 926 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 PTGDRQ13258 359 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 FANCBQ8NB91 859 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 RWDD2AQ9UIY3 292 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 LRRC10BA6NIK2 292 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 AKNAD1Q5T1N1 836 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 EP400NLQ6ZTU2 488 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 KRT26Q7Z3Y9 468 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 OTUD6BQ8N6M0 293 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 MAGEB6Q8N7X4 407 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 MB21D1Q8N884 522 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 TSEN2Q8NCE0 465 aaKnown RBP17.78■□□□□ 0.44
CKAP4-201ENST00000378026 MTRQ99707 1265 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 KIAA0754O94854 1291 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 TRIM21P19474 475 aaKnown RBP17.78■□□□□ 0.44
CKAP4-201ENST00000378026 CT47A1Q5JQC4 288 aaPredicted RBP17.78■□□□□ 0.44
CKAP4-201ENST00000378026 DCAF5Q96JK2 942 aa17.78■□□□□ 0.44
CKAP4-201ENST00000378026 KRT83P78385 493 aa17.77■□□□□ 0.44
CKAP4-201ENST00000378026 ZNF654Q8IZM8 581 aa17.77■□□□□ 0.44
CKAP4-201ENST00000378026 AENQ8WTP8 325 aaKnown RBP17.77■□□□□ 0.44
CKAP4-201ENST00000378026 PLIN2Q99541 437 aa17.77■□□□□ 0.44
CKAP4-201ENST00000378026 V9GY48 417 aaPredicted RBP17.77■□□□□ 0.44
CKAP4-201ENST00000378026 ARFGEF2Q9Y6D5 1785 aa17.77■□□□□ 0.44
CKAP4-201ENST00000378026 B4DLN1 442 aa17.77■□□□□ 0.43
CKAP4-201ENST00000378026 SNAP23O00161 211 aa17.77■□□□□ 0.43
CKAP4-201ENST00000378026 PMS1P54277 932 aaKnown RBP17.77■□□□□ 0.43
CKAP4-201ENST00000378026 TTMPQ5BVD1 217 aa17.77■□□□□ 0.43
CKAP4-201ENST00000378026 RNF187Q5TA31 235 aaPredicted RBP17.77■□□□□ 0.43
CKAP4-201ENST00000378026 CENPHQ9H3R5 247 aa17.77■□□□□ 0.43
CKAP4-201ENST00000378026 KRT14P02533 472 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 KRT2P35908 639 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 DNA2P51530 1060 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 ANKLE2Q86XL3 938 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 RPGRIP1Q96KN7 1286 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 NHEJ1Q9H9Q4 299 aaPredicted RBP17.76■□□□□ 0.43
CKAP4-201ENST00000378026 SIPA1L3O60292 1781 aaPredicted RBP17.76■□□□□ 0.43
CKAP4-201ENST00000378026 WDR17Q8IZU2 1322 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 PATL2C9JE40 543 aaKnown RBP17.76■□□□□ 0.43
CKAP4-201ENST00000378026 SMIM22K7EJ46 135 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 MCM7P33993 719 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 CCDC96Q2M329 555 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 POTEDQ86YR6 584 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 IRF2BP1Q8IU81 584 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 CD248Q9HCU0 757 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 LRWD1Q9UFC0 647 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 ECM29Q5VYK3 1845 aa17.76■□□□□ 0.43
CKAP4-201ENST00000378026 USP8P40818 1118 aa17.75■□□□□ 0.43
CKAP4-201ENST00000378026 SETQ01105 290 aaPredicted RBP17.75■□□□□ 0.43
CKAP4-201ENST00000378026 UBE3CQ15386 1083 aa17.75■□□□□ 0.43
CKAP4-201ENST00000378026 CHRNA2Q15822 529 aa17.75■□□□□ 0.43
CKAP4-201ENST00000378026 MIGA1Q8NAN2 632 aa17.75■□□□□ 0.43
CKAP4-201ENST00000378026 MINDY4BA8MYZ0 360 aa17.75■□□□□ 0.43
CKAP4-201ENST00000378026 GPTP24298 496 aa17.75■□□□□ 0.43
CKAP4-201ENST00000378026 CYLC1P35663 651 aaPredicted RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms