RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 TPX2Q9ULW0 747 aaKnown RBP11.66□□□□□ -0.54
RTN3-206ENST00000377819 PLXNC1O60486 1568 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 VWA3AA6NCI4 1184 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 APOBRQ0VD83 1088 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 GANCQ8TET4 914 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 THUMPD2Q9BTF0 503 aaKnown RBP11.66□□□□□ -0.54
RTN3-206ENST00000377819 ABCC2Q92887 1545 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 LUC7L3O95232 432 aaKnown RBP11.66□□□□□ -0.54
RTN3-206ENST00000377819 LMNAP02545 664 aaKnown RBP11.66□□□□□ -0.54
RTN3-206ENST00000377819 SRGAP2BP0DMP2 458 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 GDAP1Q8TB36 358 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 DEPTORQ8TB45 409 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 GRK7Q8WTQ7 553 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 OGFRQ9NZT2 677 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 PHF8Q9UPP1 1060 aa11.66□□□□□ -0.54
RTN3-206ENST00000377819 XPOTO43592 962 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 CPXCR1Q8N123 301 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 OR9Q1Q8NGQ5 310 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 ERO1AQ96HE7 468 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 GDAP1L1Q96MZ0 367 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 TRIM4Q9C037 500 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 IFT122Q9HBG6 1241 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DDX41Q9UJV9 622 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 FNDC3AQ9Y2H6 1198 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 TYRO3Q06418 890 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 TTLL7Q6ZT98 887 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 PATL1Q86TB9 770 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 NLRX1Q86UT6 975 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 SSH1Q8WYL5 1049 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 VPS16Q9H269 839 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 MAGI2Q86UL8 1455 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 SLC12A1Q13621 1099 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 SLC9A5Q14940 896 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 PUM3Q15397 648 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 RNF207Q6ZRF8 634 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 OTUD6AQ7L8S5 288 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 MGARPQ8TDB4 240 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 IFIH1Q9BYX4 1025 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 ABCC11Q96J66 1382 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 A0A1B0GW55 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4L2P0CJ85 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4L3P0CJ86 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4L4P0CJ87 422 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4L5P0CJ88 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4L6P0CJ89 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4L7P0CJ90 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 LMNB2Q03252 620 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 GNPTABQ3T906 1256 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 TCEANC2Q96MN5 208 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 KIFC3Q9BVG8 833 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 TRIM45Q9H8W5 580 aaPredicted RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 TYW1Q9NV66 732 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 DUX4Q9UBX2 424 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 ZKSCAN5Q9Y2L8 839 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 RBM8AQ9Y5S9 174 aaKnown RBP11.65□□□□□ -0.54
RTN3-206ENST00000377819 MAD1L1Q9Y6D9 718 aa11.65□□□□□ -0.54
RTN3-206ENST00000377819 PSMA3P25788 255 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 U2AF2P26368 475 aaKnown RBP eCLIP11.64□□□□□ -0.553e-6■■■□□ 15.2
RTN3-206ENST00000377819 RNASELQ05823 741 aaKnown RBP11.64□□□□□ -0.55
RTN3-206ENST00000377819 IFRD2Q12894 506 aaPredicted RBP11.64□□□□□ -0.55
RTN3-206ENST00000377819 KIAA1841Q6NSI8 718 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 TMTC1Q8IUR5 882 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 TEX11Q8IYF3 940 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 MYO1AQ9UBC5 1043 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 SLC12A6Q9UHW9 1150 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 AMFRQ9UKV5 643 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 KRT8P05787 483 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 SLC8A1P32418 973 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 PPARGP37231 505 aaPredicted RBP11.64□□□□□ -0.55
RTN3-206ENST00000377819 STAT1P42224 750 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 FLOT2Q14254 428 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 HS1BP3Q53T59 392 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 Q6ZUG5 572 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 STX19Q8N4C7 294 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 MYCT1Q8N699 235 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 RHPN1Q8TCX5 695 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 TMX3Q96JJ7 454 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 SMYD2Q9NRG4 433 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 SUGT1Q9Y2Z0 365 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 RTCBQ9Y3I0 505 aaKnown RBP11.64□□□□□ -0.55
RTN3-206ENST00000377819 A0A1B0GVL5 298 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 KRT87PA6NCN2 255 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 WASHC5Q12768 1159 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 BMP2KLQ5H9B9 411 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 BEND3Q5T5X7 828 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 ATL3Q6DD88 541 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 CDK13Q14004 1512 aaKnown RBP11.64□□□□□ -0.55
RTN3-206ENST00000377819 MYOM3Q5VTT5 1437 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 H0YC42 278 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 ADCY8P40145 1251 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 MAEAQ7L5Y9 396 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 CCDC13Q8IYE1 715 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 BBOF1Q8ND07 529 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 ZFYVE1Q9HBF4 777 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 ZNF212Q9UDV6 495 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 NCOA2Q15596 1464 aa11.64□□□□□ -0.55
RTN3-206ENST00000377819 TNNC2P02585 160 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 ZSCAN23Q3MJ62 389 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 RAPH1Q70E73 1250 aa11.63□□□□□ -0.55
RTN3-206ENST00000377819 FBXO41Q8TF61 875 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms