RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 RIPOR2Q9Y4F9 1068 aa13.7□□□□□ -0.22
VPS13A-204ENST00000376634 MX2P20592 715 aa13.7□□□□□ -0.22
VPS13A-204ENST00000376634 MRPL50Q8N5N7 158 aaKnown RBP13.7□□□□□ -0.22
VPS13A-204ENST00000376634 PFDN1O60925 122 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 N4BP1O75113 896 aaKnown RBP13.69□□□□□ -0.22
VPS13A-204ENST00000376634 NT5C3AQ9H0P0 336 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 KDM2BQ8NHM5 1336 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 CEP85Q6P2H3 762 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 SMC5Q8IY18 1101 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 GRIN2AQ12879 1464 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 LSM14BQ9BX40 385 aaKnown RBP13.69□□□□□ -0.22
VPS13A-204ENST00000376634 STAG1Q8WVM7 1258 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 LRGUKQ96M69 825 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 UBAP1LF5GYI3 381 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 PPARDQ03181 441 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 CCDC124Q96CT7 223 aaKnown RBP13.69□□□□□ -0.22
VPS13A-204ENST00000376634 HDAC11Q96DB2 347 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 ZNF408Q9H9D4 720 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 HOMER3Q9NSC5 361 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 ADCY8P40145 1251 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 ZNF75DP51815 510 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 LONRF2Q1L5Z9 754 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 C1orf112Q9NSG2 853 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 PPFIA4O75335 1185 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 ECE1P42892 770 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 TACO1Q9BSH4 297 aaKnown RBP13.69□□□□□ -0.22
VPS13A-204ENST00000376634 KRIT1O00522 736 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 RABEP2Q9H5N1 569 aa13.69□□□□□ -0.22
VPS13A-204ENST00000376634 LARSQ9P2J5 1176 aaKnown RBP13.69□□□□□ -0.22
VPS13A-204ENST00000376634 C11orf95C9JLR9 678 aaPredicted RBP13.68□□□□□ -0.22
VPS13A-204ENST00000376634 CASP2P42575 452 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 FAM8A1Q9UBU6 413 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 NUB1Q9Y5A7 615 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 CHMLP26374 656 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 GUCY2FP51841 1108 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 NLRP12P59046 1061 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 ZYXQ15942 572 aaKnown RBP13.68□□□□□ -0.22
VPS13A-204ENST00000376634 RRAGAQ7L523 313 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 SPATS2Q86XZ4 545 aaKnown RBP13.68□□□□□ -0.22
VPS13A-204ENST00000376634 TPH2Q8IWU9 490 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 PPP1R9AQ9ULJ8 1098 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 AOX1Q06278 1338 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 U2AF2P26368 475 aaKnown RBP eCLIP13.68□□□□□ -0.222e-6■■■□□ 16.3
VPS13A-204ENST00000376634 TRIM58Q8NG06 486 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 ANAPC5Q9UJX4 755 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 BAIAP2L1Q9UHR4 511 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 CROCCQ5TZA2 2017 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 ABL1P00519 1130 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 SAR1BQ9Y6B6 198 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 TSTA3Q13630 321 aaPredicted RBP13.68□□□□□ -0.22
VPS13A-204ENST00000376634 GLG1Q92896 1179 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 CHMP6Q96FZ7 201 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 BAG2O95816 211 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 PRPSAP1Q14558 356 aa13.68□□□□□ -0.22
VPS13A-204ENST00000376634 CWF19L2Q2TBE0 894 aaKnown RBP13.68□□□□□ -0.22
VPS13A-204ENST00000376634 TOM1O60784 492 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 PDE6CP51160 858 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 TCIRG1Q13488 830 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 ARHGEF16Q5VV41 709 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 AP1ARQ63HQ0 302 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 CSRNP1Q96S65 589 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 MYCBPQ99417 103 aaPredicted RBP13.67□□□□□ -0.22
VPS13A-204ENST00000376634 CCPG1Q9ULG6 757 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 OAS2P29728 719 aaKnown RBP13.67□□□□□ -0.22
VPS13A-204ENST00000376634 PPP2R5AQ15172 486 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 MYH8P13535 1937 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 LCA5Q86VQ0 697 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 EIF2AQ9BY44 585 aaKnown RBP13.67□□□□□ -0.22
VPS13A-204ENST00000376634 CYP2J2P51589 502 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 SRGAP2BP0DMP2 458 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 DCAF5Q96JK2 942 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 FAM207AQ9NSI2 230 aaPredicted RBP13.67□□□□□ -0.22
VPS13A-204ENST00000376634 PCDHB15Q9Y5E8 787 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 SHROOM2Q13796 1616 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 H0YCG3 227 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 GPAA1O43292 621 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 TTC4O95801 387 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 GARSP41250 739 aaKnown RBP13.67□□□□□ -0.22
VPS13A-204ENST00000376634 FAM102BQ5T8I3 360 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 NLRX1Q86UT6 975 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 PLEKHM2Q8IWE5 1019 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 SAT1P21673 171 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 DCLK2Q8N568 766 aa13.67□□□□□ -0.22
VPS13A-204ENST00000376634 ITGA6P23229 1130 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 PPP2R5BQ15173 497 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 ANKRD42Q8N9B4 389 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 STAT1P42224 750 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 V9GY48 417 aaPredicted RBP13.66□□□□□ -0.22
VPS13A-204ENST00000376634 UGGT2Q9NYU1 1516 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 SLC27A2O14975 620 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 PIK3CAP42336 1068 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 MTX1Q13505 466 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 IDI1Q13907 227 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 TAB2Q9NYJ8 693 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 HSP90AA5PQ58FG0 334 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 NOP9Q86U38 636 aaKnown RBP13.66□□□□□ -0.22
VPS13A-204ENST00000376634 NME8Q8N427 588 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 DEPTORQ8TB45 409 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 POLKQ9UBT6 870 aa13.66□□□□□ -0.22
VPS13A-204ENST00000376634 PSDA5PKW4 1024 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms