RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 K7ELQ4 463 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SPOPO43791 374 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RSPH10BP0C881 870 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 DNM2P50570 870 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 EVCP57679 992 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 ARF3P61204 181 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 ARF1P84077 181 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SLC9C1Q4G0N8 1177 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 KRT40Q6A162 431 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 STX19Q8N4C7 294 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 TNPO1Q92973 898 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SH3KBP1Q96B97 665 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 NOX5Q96PH1 765 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 SLC5A4Q9NY91 659 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 TSR3Q9UJK0 312 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 INPP5FQ9Y2H2 1132 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 IGSF3O75054 1194 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 FOSP01100 380 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 EPHB1P54762 984 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 DHX9Q08211 1270 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 KRT27Q7Z3Y8 459 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 ADAT2Q7Z6V5 191 aaKnown RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 RPAP2Q8IXW5 612 aaPredicted RBP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC13Q8IYE1 715 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 MRFAP1L1Q96HT8 127 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 AATFQ9NY61 560 aaKnown RBP eCLIP5.09□□□□□ -1.59
SCN1A-202ENST00000375405 MAD1L1Q9Y6D9 718 aa5.09□□□□□ -1.59
SCN1A-202ENST00000375405 MAN1A2O60476 641 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 AP1G2O75843 785 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 ITGAXP20702 1163 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 GPTP24298 496 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 SLC8A1P32418 973 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 ITGADQ13349 1161 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 PHKG1Q16816 387 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 POTEEQ6S8J3 1075 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 RSRC2Q7L4I2 434 aaKnown RBP5.09□□□□□ -1.6
SCN1A-202ENST00000375405 C8orf76Q96K31 380 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 POLR3EQ9NVU0 708 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 PCDHB13Q9Y5F0 798 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 CUX2O14529 1486 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 OTOL1A6NHN0 477 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-202ENST00000375405 SKAP2O75563 359 aaPredicted RBP5.09□□□□□ -1.6
SCN1A-202ENST00000375405 RPN2P04844 631 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 GJA1P17302 382 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 SCNN1BP51168 640 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 MRPS35P82673 323 aaKnown RBP5.09□□□□□ -1.6
SCN1A-202ENST00000375405 ALFQ53S48 1182 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 EHBP1Q8NDI1 1231 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 AZI2Q9H6S1 392 aa5.09□□□□□ -1.6
SCN1A-202ENST00000375405 HSPA1AP0DMV8 641 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 HSPA1BP0DMV9 641 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 PTPN1P18031 435 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ASPHQ12797 758 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 MCMDC2Q4G0Z9 681 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TRIM68Q6AZZ1 485 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RUBCNQ92622 972 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 LRRC27Q9C0I9 530 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 POLE3Q9NRF9 147 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 BTBD11A6QL63 1104 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 HPDP32754 393 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 MRPS15P82914 257 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RRM2BQ7LG56 351 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RAB44Q7Z6P3 723 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RUNDC1Q96C34 613 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 PARVGQ9HBI0 331 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 CABP2Q9NPB3 220 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 PDRG1Q9NUG6 133 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ZNF213O14771 459 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 P4HA2O15460 535 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 AFMP43652 599 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 EIF6P56537 245 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 STX1BP61266 288 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RCN1Q15293 331 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ZYG11AQ6WRX3 759 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 RNF207Q6ZRF8 634 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 LBHD1Q9BQE6 289 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 OXCT2Q9BYC2 517 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TFCP2L1Q9NZI6 479 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 KIF17Q9P2E2 1029 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ZC3H7BQ9UGR2 993 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 PRDM2Q13029 1718 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 BIRC5O15392 142 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 LMNB1P20700 586 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 MECOMQ03112 1051 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 SHQ1Q6PI26 577 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 HS2ST1Q7LGA3 356 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 NT5DC4Q86YG4 428 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 C7orf25Q9BPX7 421 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 LSG1Q9H089 658 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TRMT112Q9UI30 125 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 PARP3Q9Y6F1 533 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TBKBP1A7MCY6 615 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC130P13994 396 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 CD19P15391 556 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 SMTNP53814 917 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 ATXN3P54252 364 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 CUL4AQ13619 759 aa5.08□□□□□ -1.6
SCN1A-202ENST00000375405 KARSQ15046 597 aaKnown RBP5.08□□□□□ -1.6
SCN1A-202ENST00000375405 TAF7Q15545 349 aaPredicted RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms