RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 FKBP1BP68106 108 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 EVX2Q03828 476 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 GRM1Q13255 1194 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 DEFB115Q30KQ5 88 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 DNTTIP2Q5QJE6 756 aaKnown RBP17.88■□□□□ 0.45
CCDC40-202ENST00000374876 KRT40Q6A162 431 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 PAXIP1Q6ZW49 1069 aaPredicted RBP17.88■□□□□ 0.45
CCDC40-202ENST00000374876 DRC7Q8IY82 874 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 MYL10Q9BUA6 226 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 TAOK2Q9UL54 1235 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 FOCADQ5VW36 1801 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 CEP350Q5VT06 3117 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 ZNF75DP51815 510 aa17.88■□□□□ 0.45
CCDC40-202ENST00000374876 C11orf57Q6ZUT1 292 aaPredicted RBP17.88■□□□□ 0.45
CCDC40-202ENST00000374876 ATRNL1Q5VV63 1379 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 ERICH2A1L162 156 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 PLCD1P51178 756 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 IQCB1Q15051 598 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 NTRK3Q16288 839 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.87■□□□□ 0.45
CCDC40-202ENST00000374876 PLA2G4DQ86XP0 818 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 KLRG1Q96E93 195 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 DHX36Q9H2U1 1008 aaKnown RBP17.87■□□□□ 0.45
CCDC40-202ENST00000374876 RNF41Q9H4P4 317 aaPredicted RBP17.87■□□□□ 0.45
CCDC40-202ENST00000374876 PI4KBQ9UBF8 816 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 TACC3Q9Y6A5 838 aa17.87■□□□□ 0.45
CCDC40-202ENST00000374876 CYP2D6P10635 497 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 IREB2P48200 963 aaKnown RBP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 SSRP1Q08945 709 aaKnown RBP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 DCAF15Q66K64 600 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 CYP4F22Q6NT55 531 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 HOOK2Q96ED9 719 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 CLMNQ96JQ2 1002 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 KCNF1Q9H3M0 494 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 ATP8A2Q9NTI2 1148 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 FAM217BQ9NTX9 383 aaPredicted RBP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 MYH1P12882 1939 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 CYP2D7A0A087X1C5 515 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 BECN2A8MW95 431 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 SMIM22K7EJ46 135 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 RANBP6O60518 1105 aaKnown RBP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 WTAPQ15007 396 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 ZRSR1Q15695 479 aaKnown RBP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 LDLRAD1Q5T700 205 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 WASF1Q92558 559 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 ZKSCAN4Q969J2 545 aaPredicted RBP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 WRNIP1Q96S55 665 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 SLC26A6Q9BXS9 759 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.86■□□□□ 0.45
CCDC40-202ENST00000374876 PAPPA2Q9BXP8 1791 aa17.86■□□□□ 0.45
CCDC40-202ENST00000374876 RASSF10A6NK89 507 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 USP17L12C9JPN9 530 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 USP17L21D6R901 530 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 INPP5BP32019 993 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 ZNF157P51786 506 aaPredicted RBP17.85■□□□□ 0.45
CCDC40-202ENST00000374876 SLC39A14Q15043 492 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.85■□□□□ 0.45
CCDC40-202ENST00000374876 CEP57L1Q8IYX8 460 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 STK11IPQ8N1F8 1099 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 C17orf53Q8N3J3 647 aaPredicted RBP17.85■□□□□ 0.45
CCDC40-202ENST00000374876 ZKSCAN3Q9BRR0 538 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 ZNF341Q9BYN7 854 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 NAT10Q9H0A0 1025 aaKnown RBP17.85■□□□□ 0.45
CCDC40-202ENST00000374876 STK36Q9NRP7 1315 aa17.85■□□□□ 0.45
CCDC40-202ENST00000374876 BAZ2AQ9UIF9 1905 aaKnown RBP17.85■□□□□ 0.45
CCDC40-202ENST00000374876 FMNL1O95466 1100 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-202ENST00000374876 HLA-DOAP06340 250 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 PTGS1P23219 599 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 MAP3K9P80192 1104 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 MAP3K10Q02779 954 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 PPARAQ07869 468 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 RGMBQ6NW40 437 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 TMTC2Q8N394 836 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.84■□□□□ 0.45
CCDC40-202ENST00000374876 SPTLC3Q9NUV7 552 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 IFNAR1P17181 557 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 CMA1P23946 247 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 CTR9Q6PD62 1173 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 CRACR2BQ8N4Y2 399 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-202ENST00000374876 DNAJC5GQ8N7S2 189 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 JMYQ8N9B5 988 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 KIAA1524Q8TCG1 905 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 ERCC4Q92889 916 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-202ENST00000374876 MTA3Q9BTC8 594 aa17.84■□□□□ 0.45
CCDC40-202ENST00000374876 COL2A1P02458 1487 aaPredicted RBP17.84■□□□□ 0.45
CCDC40-202ENST00000374876 PHF20L1A8MW92 1017 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 MINDY4BA8MYZ0 360 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 MARCKSP29966 332 aaPredicted RBP17.83■□□□□ 0.45
CCDC40-202ENST00000374876 VEGFBP49765 207 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 RTN1Q16799 776 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 AXDND1Q5T1B0 1012 aaPredicted RBP17.83■□□□□ 0.45
CCDC40-202ENST00000374876 SARM1Q6SZW1 724 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 CCDC186Q7Z3E2 898 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 FOXP4Q8IVH2 680 aaPredicted RBP17.83■□□□□ 0.45
CCDC40-202ENST00000374876 TRIM22Q8IYM9 498 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 ANKRD13AQ8IZ07 590 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 UBAC1Q9BSL1 405 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 DNAJC18Q9H819 358 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 CLIP2Q9UDT6 1046 aa17.83■□□□□ 0.45
CCDC40-202ENST00000374876 NID2Q14112 1375 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms