RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SWAP70Q9UH65 585 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 ANAPC4Q9UJX5 808 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 HPS5Q9UPZ3 1129 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 DOCK1Q14185 1865 aa16.48■□□□□ 0.23
HMGA1-203ENST00000374116 NMT2O60551 498 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 GUCY1A2P33402 732 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 DGKZQ13574 1117 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 SEPT2Q15019 361 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 DEFB115Q30KQ5 88 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 RGMBQ6NW40 437 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 MFSD6Q6ZSS7 791 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 FUCA2Q9BTY2 467 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 TFIP11Q9UBB9 837 aaKnown RBP16.47■□□□□ 0.23
HMGA1-203ENST00000374116 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.47■□□□□ 0.23
HMGA1-203ENST00000374116 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.47■□□□□ 0.232e-259■■■■■ 48.7
HMGA1-203ENST00000374116 B4E1Z4 1266 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 SLC3A2P08195 630 aaKnown RBP16.47■□□□□ 0.23
HMGA1-203ENST00000374116 PTPRAP18433 802 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 CCT2P78371 535 aaKnown RBP16.47■□□□□ 0.23
HMGA1-203ENST00000374116 ATL3Q6DD88 541 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 RALYLQ86SE5 291 aaKnown RBP16.47■□□□□ 0.23
HMGA1-203ENST00000374116 ZNF444Q8N0Y2 327 aaPredicted RBP16.47■□□□□ 0.23
HMGA1-203ENST00000374116 ZKSCAN3Q9BRR0 538 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 PICK1Q9NRD5 415 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 ZBTB21Q9ULJ3 1066 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 ZHX2Q9Y6X8 837 aa16.47■□□□□ 0.23
HMGA1-203ENST00000374116 DHX16O60231 1041 aaKnown RBP16.46■□□□□ 0.23
HMGA1-203ENST00000374116 AOC2O75106 756 aa16.46■□□□□ 0.23
HMGA1-203ENST00000374116 TFAP4Q01664 338 aa16.46■□□□□ 0.23
HMGA1-203ENST00000374116 CYB5R4Q7L1T6 521 aa16.46■□□□□ 0.23
HMGA1-203ENST00000374116 RASAL3Q86YV0 1011 aa16.46■□□□□ 0.23
HMGA1-203ENST00000374116 STAG1Q8WVM7 1258 aa16.46■□□□□ 0.23
HMGA1-203ENST00000374116 NCOA5Q9HCD5 579 aaKnown RBP16.46■□□□□ 0.23
HMGA1-203ENST00000374116 NAP1L2Q9ULW6 460 aaPredicted RBP16.46■□□□□ 0.23
HMGA1-203ENST00000374116 IRF6O14896 467 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 TRDNQ13061 729 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.45■□□□□ 0.22
HMGA1-203ENST00000374116 TRIM75PA6NK02 468 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 RASSF10A6NK89 507 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 TSPY2A6NKD2 308 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 FAM155AB1AL88 458 aaPredicted RBP16.45■□□□□ 0.22
HMGA1-203ENST00000374116 KDM4AO75164 1064 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 TSPY3P0CV98 308 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 TSPY8P0CW00 308 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 CCDC192P0DO97 292 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 FDPSP14324 419 aaKnown RBP16.45■□□□□ 0.22
HMGA1-203ENST00000374116 ATP2B2Q01814 1243 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 ZYXQ15942 572 aaKnown RBP16.45■□□□□ 0.22
HMGA1-203ENST00000374116 NOL9Q5SY16 702 aaKnown RBP16.45■□□□□ 0.22
HMGA1-203ENST00000374116 CAPNS2Q96L46 248 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 NUP62CLQ9H1M0 184 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 CABP5Q9NP86 173 aa16.45■□□□□ 0.22
HMGA1-203ENST00000374116 DDX19AQ9NUU7 478 aaKnown RBP16.45■□□□□ 0.22
HMGA1-203ENST00000374116 SH2B2O14492 632 aaPredicted RBP16.44■□□□□ 0.22
HMGA1-203ENST00000374116 ASNSP08243 561 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 LIG1P18858 919 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 ECE1P42892 770 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 VEGFBP49765 207 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 ACER1Q8TDN7 264 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 IGDCC4Q8TDY8 1250 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 WNK4Q96J92 1243 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 TMEM87BQ96K49 555 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 PHIPQ8WWQ0 1821 aa16.44■□□□□ 0.22
HMGA1-203ENST00000374116 KLF18A0A0U1RQI7 1052 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 FGRP09769 529 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 SPP2Q13103 211 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 SPRYD7Q5W111 196 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 ZNF396Q96N95 335 aaPredicted RBP16.43■□□□□ 0.22
HMGA1-203ENST00000374116 ZNF287Q9HBT7 754 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 IL17RBQ9NRM6 502 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 ZSWIM5Q9P217 1185 aa16.43■□□□□ 0.22
HMGA1-203ENST00000374116 SPDYE5A6NIY4 337 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 USP17L5A8MUK1 530 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 ORC4O43929 436 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 ADD1P35611 737 aaKnown RBP16.42■□□□□ 0.22
HMGA1-203ENST00000374116 PDE4CQ08493 712 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 SGMS1Q86VZ5 419 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 ERO1BQ86YB8 467 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 SIAH1Q8IUQ4 282 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 RGS22Q8NE09 1264 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 ANKRD7Q92527 254 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 CEP95Q96GE4 821 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 A0A1W2PRG0 241 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 SLC10A3P09131 477 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 TMEM179Q6ZVK1 233 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 PGBD1Q96JS3 809 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 CCDC17Q96LX7 622 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 TNMDQ9H2S6 317 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 RNF41Q9H4P4 317 aaPredicted RBP16.42■□□□□ 0.22
HMGA1-203ENST00000374116 DACT1Q9NYF0 836 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 RCOR1Q9UKL0 485 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 AFG3L2Q9Y4W6 797 aa16.42■□□□□ 0.22
HMGA1-203ENST00000374116 GOLGA8BA8MQT2 603 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 RAD21O60216 631 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 EEF2P13639 858 aaKnown RBP16.41■□□□□ 0.22
HMGA1-203ENST00000374116 LIFRP42702 1097 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 ICA1Q05084 483 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 PPATQ06203 517 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 MTMR2Q13614 643 aa16.41■□□□□ 0.22
HMGA1-203ENST00000374116 NOLC1Q14978 699 aaKnown RBP eCLIP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms