RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 PSMC4P43686 418 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 TRDNQ13061 729 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 IQCA1Q86XH1 822 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 ENAHQ8N8S7 591 aaPredicted RBP17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 MCOLN1Q9GZU1 580 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 EFCC1Q9HA90 598 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 HTTP42858 3142 aa17.75■□□□□ 0.43
SMPDL3A-201ENST00000368440 MCCP23508 829 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 NT5C2P49902 561 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 ANTXR2P58335 489 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 ERVK-9P63128 1117 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 ERVK-24P63145 666 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 KIF22Q14807 665 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 CHST3Q7LGC8 479 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 MB21D2Q8IYB1 491 aaPredicted RBP17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 NCOA7Q8NI08 942 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 PLXNB2O15031 1838 aa17.74■□□□□ 0.43
SMPDL3A-201ENST00000368440 RALYLQ86SE5 291 aaKnown RBP17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 RASEFQ8IZ41 740 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 GMCL1Q96IK5 515 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 TTC14Q96N46 770 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 RABGAP1Q9Y3P9 1069 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 BMP3P12645 472 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 SEC23AQ15436 765 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 KCTD1Q719H9 257 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 DGKHQ86XP1 1220 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 TNS4Q8IZW8 715 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 GPRC5AQ8NFJ5 357 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 GTF3C2Q8WUA4 911 aaPredicted RBP17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 UBAC1Q9BSL1 405 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 PORCNQ9H237 461 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 HOXC10Q9NYD6 342 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 PPP1R9AQ9ULJ8 1098 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 MYPNQ86TC9 1320 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 DOCK3Q8IZD9 2030 aa17.73■□□□□ 0.43
SMPDL3A-201ENST00000368440 FMNL1O95466 1100 aaPredicted RBP17.72■□□□□ 0.43
SMPDL3A-201ENST00000368440 ISY1Q9ULR0 285 aaKnown RBP17.72■□□□□ 0.43
SMPDL3A-201ENST00000368440 REC8O95072 547 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 SLC1A4P43007 532 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 ANKS1AQ92625 1134 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 SLF1Q9BQI6 1058 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 SENP2Q9HC62 589 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 ADAMTS5Q9UNA0 930 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 TMEM232C9JQI7 657 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 FCGRTP55899 365 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 ADCK5Q3MIX3 580 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 CCDC178Q5BJE1 867 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 RNF20Q5VTR2 975 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 PNMA1Q8ND90 353 aa17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 FRMPD2Q68DX3 1309 aaPredicted RBP17.71■□□□□ 0.43
SMPDL3A-201ENST00000368440 VWA5AO00534 786 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 TNPO2O14787 897 aaKnown RBP17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 PDHBP11177 359 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 TMEM132BQ14DG7 1078 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 CCDC96Q2M329 555 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 REPS2Q8NFH8 660 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 DCAF4Q8WV16 495 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 KIFC2Q96AC6 838 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 KAT14Q9H8E8 782 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 GPHNQ9NQX3 736 aaPredicted RBP17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 FEM1BQ9UK73 627 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 GABRQQ9UN88 632 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 PTPN22Q9Y2R2 807 aa17.7■□□□□ 0.42
SMPDL3A-201ENST00000368440 IFIT3O14879 490 aaKnown RBP17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 HSPA4P34932 840 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 PRKCZQ05513 592 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 IFIT1BQ5T764 474 aaKnown RBP17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 TTBK2Q6IQ55 1244 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 SRRDQ9UH36 339 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 SNHG28P0DPA3 235 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 STAT2P52630 851 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 ARHGEF6Q15052 776 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 FBXO46Q6PJ61 603 aaPredicted RBP17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 MB21D1Q8N884 522 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 PRPF38AQ8NAV1 312 aaKnown RBP17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 KCNB2Q92953 911 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 MOV10L1Q9BXT6 1211 aaKnown RBP17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 SPATC1LQ9H0A9 340 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 GPCPD1Q9NPB8 672 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 PTCH2Q9Y6C5 1203 aa17.69■□□□□ 0.42
SMPDL3A-201ENST00000368440 PRC1O43663 620 aa17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 IKQ13123 557 aaPredicted RBP17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 PLS1Q14651 629 aa17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 PKN2Q16513 984 aaKnown RBP17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 TSGA10IPQ3SY00 556 aa17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 IGDCC4Q8TDY8 1250 aa17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 USP26Q9BXU7 913 aa17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 ZNF214Q9UL59 606 aaPredicted RBP17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 SNX14Q9Y5W7 946 aa17.68■□□□□ 0.42
SMPDL3A-201ENST00000368440 GNRH1P01148 92 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 SLC16A2P36021 539 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 ZNF543Q08ER8 600 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 TMEM67Q5HYA8 995 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 NEK1Q96PY6 1258 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 LRRC2Q9BYS8 371 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 GOLGA8HP0CJ92 632 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 ZKSCAN1P17029 563 aaPredicted RBP17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 MAPK4P31152 587 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 MCM5P33992 734 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 SNAP25P60880 206 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms