RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 ORC4O43929 436 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 TTLL1O95922 423 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 NDUFB10O96000 172 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 GJB1P08034 283 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 CYP2B6P20813 491 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 MB21D1Q8N884 522 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 NUP88Q99567 741 aaPredicted RBP22.5■■□□□ 1.19
CKS1B-203ENST00000368439 SPATC1LQ9H0A9 340 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 RNF208Q9H0X6 261 aa22.5■■□□□ 1.19
CKS1B-203ENST00000368439 HIP1O00291 1037 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 HMGCRP04035 888 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 PTPREP23469 700 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 GJA8P48165 433 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 TRIM32Q13049 653 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 CCAR1Q8IX12 1150 aaKnown RBP22.49■■□□□ 1.19
CKS1B-203ENST00000368439 IL25Q9H293 177 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 IL17RBQ9NRM6 502 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 DIAPH3Q9NSV4 1193 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 PPP1R9AQ9ULJ8 1098 aa22.49■■□□□ 1.19
CKS1B-203ENST00000368439 RAD21O60216 631 aa22.48■■□□□ 1.19
CKS1B-203ENST00000368439 NOVP48745 357 aa22.48■■□□□ 1.19
CKS1B-203ENST00000368439 MFAP1P55081 439 aaKnown RBP22.48■■□□□ 1.19
CKS1B-203ENST00000368439 TMEM132BQ14DG7 1078 aa22.48■■□□□ 1.19
CKS1B-203ENST00000368439 LRRC47Q8N1G4 583 aaKnown RBP22.48■■□□□ 1.19
CKS1B-203ENST00000368439 GMCL1P1Q8NEA9 526 aa22.48■■□□□ 1.19
CKS1B-203ENST00000368439 SHCBP1Q8NEM2 672 aa22.48■■□□□ 1.19
CKS1B-203ENST00000368439 REPS2Q8NFH8 660 aa22.48■■□□□ 1.19
CKS1B-203ENST00000368439 PAK6Q9NQU5 681 aaPredicted RBP22.48■■□□□ 1.19
CKS1B-203ENST00000368439 ZNFX1Q9P2E3 1918 aaKnown RBP22.48■■□□□ 1.19
CKS1B-203ENST00000368439 SLC15A5A6NIM6 579 aa22.47■■□□□ 1.19
CKS1B-203ENST00000368439 NMT2O60551 498 aa22.47■■□□□ 1.19
CKS1B-203ENST00000368439 RGS2P41220 211 aa22.47■■□□□ 1.19
CKS1B-203ENST00000368439 MAP2K5Q13163 448 aa22.47■■□□□ 1.19
CKS1B-203ENST00000368439 GRB14Q14449 540 aa22.47■■□□□ 1.19
CKS1B-203ENST00000368439 TSPY2A6NKD2 308 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 VWA5AO00534 786 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 ERCC3P19447 782 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 HAND2P61296 217 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 CCL14Q16627 93 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 MAP3K21Q5TCX8 1036 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 NKX2-3Q8TAU0 364 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 APBA2Q99767 749 aa22.46■■□□□ 1.19
CKS1B-203ENST00000368439 RANBP6O60518 1105 aaKnown RBP22.45■■□□□ 1.18
CKS1B-203ENST00000368439 HOXC6P09630 235 aa22.45■■□□□ 1.18
CKS1B-203ENST00000368439 WDR78Q5VTH9 848 aa22.45■■□□□ 1.18
CKS1B-203ENST00000368439 SAMD1Q6SPF0 538 aaPredicted RBP22.45■■□□□ 1.18
CKS1B-203ENST00000368439 TBC1D10CQ8IV04 446 aa22.45■■□□□ 1.18
CKS1B-203ENST00000368439 U2AF1L4Q8WU68 220 aaKnown RBP22.45■■□□□ 1.18
CKS1B-203ENST00000368439 SLF1Q9BQI6 1058 aa22.45■■□□□ 1.18
CKS1B-203ENST00000368439 ZNF214Q9UL59 606 aaPredicted RBP22.45■■□□□ 1.18
CKS1B-203ENST00000368439 SGPL1O95470 568 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 IGHA2P01877 340 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 SLFN13Q68D06 897 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 UBE2Q1Q7Z7E8 422 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 TRMT44Q8IYL2 757 aaKnown RBP22.44■■□□□ 1.18
CKS1B-203ENST00000368439 STAG1Q8WVM7 1258 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 DSCC1Q9BVC3 393 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.44■■□□□ 1.18
CKS1B-203ENST00000368439 CWC22Q9HCG8 908 aaKnown RBP22.44■■□□□ 1.18
CKS1B-203ENST00000368439 FLRT1Q9NZU1 646 aa22.44■■□□□ 1.18
CKS1B-203ENST00000368439 RPTORQ8N122 1335 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 STRNO43815 780 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 PLS1Q14651 629 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 AKNAD1Q5T1N1 836 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 RIOX2Q8IUF8 465 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 NPLOC4Q8TAT6 608 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 CRISPLD2Q9H0B8 497 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 MROH8Q9H579 483 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 IVNS1ABPQ9Y6Y0 642 aa22.43■■□□□ 1.18
CKS1B-203ENST00000368439 PCP11498 1178 aaKnown RBP22.42■■□□□ 1.18
CKS1B-203ENST00000368439 ZKSCAN1P17029 563 aaPredicted RBP22.42■■□□□ 1.18
CKS1B-203ENST00000368439 PPP4R3BQ5MIZ7 849 aa22.42■■□□□ 1.18
CKS1B-203ENST00000368439 PRPF38AQ8NAV1 312 aaKnown RBP22.42■■□□□ 1.18
CKS1B-203ENST00000368439 GMCL1Q96IK5 515 aa22.42■■□□□ 1.18
CKS1B-203ENST00000368439 DEFB118Q96PH6 123 aa22.42■■□□□ 1.18
CKS1B-203ENST00000368439 TCP11L1Q9NUJ3 509 aa22.42■■□□□ 1.18
CKS1B-203ENST00000368439 STX8Q9UNK0 236 aa22.42■■□□□ 1.18
CKS1B-203ENST00000368439 SLC25A27O95847 323 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 BMP3P12645 472 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 PRKAR2AP13861 404 aaKnown RBP22.41■■□□□ 1.18
CKS1B-203ENST00000368439 CHMLP26374 656 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 ADORA2AP29274 412 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 STAT3P40763 770 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 CACNB2Q08289 660 aaPredicted RBP22.41■■□□□ 1.18
CKS1B-203ENST00000368439 RRP12Q5JTH9 1297 aaKnown RBP22.41■■□□□ 1.18
CKS1B-203ENST00000368439 MFSD6Q6ZSS7 791 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 NCAPG2Q86XI2 1143 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 ABRAQ8N0Z2 381 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 HMX1Q9NP08 348 aaPredicted RBP22.41■■□□□ 1.18
CKS1B-203ENST00000368439 FEM1BQ9UK73 627 aa22.41■■□□□ 1.18
CKS1B-203ENST00000368439 NEDD4P46934 1319 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 RAD50Q92878 1312 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 ZNF213O14771 459 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 COBLO75128 1261 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 RASGRP2Q7LDG7 609 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 TOMM22Q9NS69 142 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 PLXNA1Q9UIW2 1896 aa22.4■■□□□ 1.18
CKS1B-203ENST00000368439 FRMPD3Q5JV73 1810 aa22.39■■□□□ 1.17
CKS1B-203ENST00000368439 ATP2A1O14983 1001 aa22.39■■□□□ 1.17
CKS1B-203ENST00000368439 MCCP23508 829 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms