RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 KCNJ14Q9UNX9 436 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 UTRNP46939 3433 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 SCN4AP35499 1836 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 ASNSP08243 561 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 GNL2Q13823 731 aaKnown RBP21.57■■□□□ 1.04
CLN3-204ENST00000357857 SLFN13Q68D06 897 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 USP48Q86UV5 1035 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 GMCL1P1Q8NEA9 526 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 CPVLQ9H3G5 476 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 GPCPD1Q9NPB8 672 aa21.57■■□□□ 1.04
CLN3-204ENST00000357857 DOCK1Q14185 1865 aa21.56■■□□□ 1.04
CLN3-204ENST00000357857 GLTPD2A6NH11 291 aa21.56■■□□□ 1.04
CLN3-204ENST00000357857 RAD21O60216 631 aa21.56■■□□□ 1.04
CLN3-204ENST00000357857 TRAK2O60296 914 aa21.56■■□□□ 1.04
CLN3-204ENST00000357857 ZNF396Q96N95 335 aaPredicted RBP21.56■■□□□ 1.04
CLN3-204ENST00000357857 RIOX1Q9H6W3 641 aa21.56■■□□□ 1.04
CLN3-204ENST00000357857 F5H6K3 240 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 KLRC3Q07444 240 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 SKOR2Q2VWA4 1001 aaPredicted RBP21.55■■□□□ 1.04
CLN3-204ENST00000357857 ATL3Q6DD88 541 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 SHISA4Q96DD7 197 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 RRP36Q96EU6 259 aaKnown RBP21.55■■□□□ 1.04
CLN3-204ENST00000357857 PHF20Q9BVI0 1012 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 ZNF341Q9BYN7 854 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 UBA5Q9GZZ9 404 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 GINM1Q9NU53 330 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 TFIP11Q9UBB9 837 aaKnown RBP21.55■■□□□ 1.04
CLN3-204ENST00000357857 A0A1W2PRG0 241 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 U2AF2P26368 475 aaKnown RBP eCLIP21.55■■□□□ 1.04
CLN3-204ENST00000357857 SLC1A4P43007 532 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 PRAMEF18Q5VWM3 479 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 KCTD1Q719H9 257 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 DIS3L2Q8IYB7 885 aaKnown RBP21.55■■□□□ 1.04
CLN3-204ENST00000357857 DCPSQ96C86 337 aaKnown RBP21.55■■□□□ 1.04
CLN3-204ENST00000357857 SCAND2PQ9GZW5 306 aaPredicted RBP21.55■■□□□ 1.04
CLN3-204ENST00000357857 CFAP45Q9UL16 551 aa21.55■■□□□ 1.04
CLN3-204ENST00000357857 CTNND1O60716 968 aaKnown RBP21.54■■□□□ 1.04
CLN3-204ENST00000357857 USP50Q70EL3 339 aaPredicted RBP21.54■■□□□ 1.04
CLN3-204ENST00000357857 GMCL1Q96IK5 515 aa21.54■■□□□ 1.04
CLN3-204ENST00000357857 FOXP1Q9H334 677 aaPredicted RBP21.54■■□□□ 1.04
CLN3-204ENST00000357857 VAT1LQ9HCJ6 419 aa21.54■■□□□ 1.04
CLN3-204ENST00000357857 SH3GLB2Q9NR46 395 aa21.54■■□□□ 1.04
CLN3-204ENST00000357857 SEC63Q9UGP8 760 aaKnown RBP21.54■■□□□ 1.04
CLN3-204ENST00000357857 ISY1Q9ULR0 285 aaKnown RBP21.54■■□□□ 1.04
CLN3-204ENST00000357857 TMX2Q9Y320 296 aa21.54■■□□□ 1.04
CLN3-204ENST00000357857 NDUFB10O96000 172 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 VEGFAP15692 232 aaPredicted RBP21.53■■□□□ 1.04
CLN3-204ENST00000357857 EPHX2P34913 555 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 ECE1P42892 770 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 MYSM1Q5VVJ2 828 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 TTBK2Q6IQ55 1244 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 ACER1Q8TDN7 264 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 SH2D4AQ9H788 454 aa21.53■■□□□ 1.04
CLN3-204ENST00000357857 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.53■■□□□ 1.04
CLN3-204ENST00000357857 BTBD18B2RXH4 712 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 SUPT20HL1Q3ZLR7 823 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 HOMER1Q86YM7 354 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 GPKOWQ92917 476 aaPredicted RBP eCLIP21.52■■□□□ 1.04
CLN3-204ENST00000357857 PIGSQ96S52 555 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 BRMS1Q9HCU9 246 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 GOPCQ9HD26 462 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 WDR90Q96KV7 1748 aa21.52■■□□□ 1.04
CLN3-204ENST00000357857 KRT2P35908 639 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 WWC2Q6AWC2 1192 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 HEATR3Q7Z4Q2 680 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 NOSTRINQ8IVI9 506 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 SULF1Q8IWU6 871 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 SPATA32Q96LK8 384 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 ZNF112Q9UJU3 913 aa21.52■■□□□ 1.03
CLN3-204ENST00000357857 DDX49Q9Y6V7 483 aaKnown RBP21.52■■□□□ 1.03
CLN3-204ENST00000357857 SSC5DA1L4H1 1573 aa21.51■■□□□ 1.03
CLN3-204ENST00000357857 NLRP5P59047 1200 aa21.51■■□□□ 1.03
CLN3-204ENST00000357857 ADGRF4Q8IZF3 695 aa21.51■■□□□ 1.03
CLN3-204ENST00000357857 FAM177A1Q8N128 213 aaPredicted RBP21.51■■□□□ 1.03
CLN3-204ENST00000357857 LEO1Q8WVC0 666 aaPredicted RBP21.51■■□□□ 1.03
CLN3-204ENST00000357857 USP28Q96RU2 1077 aa21.51■■□□□ 1.03
CLN3-204ENST00000357857 BARHL2Q9NY43 387 aa21.51■■□□□ 1.03
CLN3-204ENST00000357857 ELP1O95163 1332 aa21.51■■□□□ 1.03
CLN3-204ENST00000357857 IQCA1LA6NCM1 817 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 STXBP3O00186 592 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 BMP3P12645 472 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 CALML3P27482 149 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 INPP5BP32019 993 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 CCDC148Q8NFR7 591 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 OXER1Q8TDS5 423 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 JMJD4Q9H9V9 463 aa21.5■■□□□ 1.03
CLN3-204ENST00000357857 GADD45BO75293 160 aaPredicted RBP21.49■■□□□ 1.03
CLN3-204ENST00000357857 SLC16A2P36021 539 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 CEBPZQ03701 1054 aaKnown RBP21.49■■□□□ 1.03
CLN3-204ENST00000357857 NR5A1Q13285 461 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 KLHL40Q2TBA0 621 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 CCDC84Q86UT8 332 aaPredicted RBP21.49■■□□□ 1.03
CLN3-204ENST00000357857 ZC3H15Q8WU90 426 aaKnown RBP21.49■■□□□ 1.03
CLN3-204ENST00000357857 WRNIP1Q96S55 665 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 NUP88Q99567 741 aaPredicted RBP21.49■■□□□ 1.03
CLN3-204ENST00000357857 VCPKMTQ9H867 229 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 hCG_1984214I3L0E3 225 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 NPY5RQ15761 445 aa21.49■■□□□ 1.03
CLN3-204ENST00000357857 ZNF713Q8N859 430 aaPredicted RBP21.49■■□□□ 1.03
CLN3-204ENST00000357857 FTOQ9C0B1 505 aaKnown RBP eCLIP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms