RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 RGS2P41220 211 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 TFAP4Q01664 338 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 KLRC3Q07444 240 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 MAP2K5Q13163 448 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 MB21D1Q8N884 522 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 NEDD1Q8NHV4 660 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 MKL1Q969V6 931 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 DEFB118Q96PH6 123 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 SPATC1LQ9H0A9 340 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 ADAMTS5Q9UNA0 930 aa21.86■■□□□ 1.09
CLN3-202ENST00000355477 SLC15A5A6NIM6 579 aa21.85■■□□□ 1.09
CLN3-202ENST00000355477 NDUFB10O96000 172 aa21.85■■□□□ 1.09
CLN3-202ENST00000355477 TSPY3P0CV98 308 aa21.85■■□□□ 1.09
CLN3-202ENST00000355477 TSPY8P0CW00 308 aa21.85■■□□□ 1.09
CLN3-202ENST00000355477 HSPD1P10809 573 aaKnown RBP21.85■■□□□ 1.09
CLN3-202ENST00000355477 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.85■■□□□ 1.09
CLN3-202ENST00000355477 ANAPC4Q9UJX5 808 aa21.85■■□□□ 1.09
CLN3-202ENST00000355477 PLIN4Q96Q06 1357 aa21.85■■□□□ 1.09
CLN3-202ENST00000355477 CCDC171Q6TFL3 1326 aa21.84■■□□□ 1.09
CLN3-202ENST00000355477 PLS1Q14651 629 aa21.84■■□□□ 1.09
CLN3-202ENST00000355477 TMEM132BQ14DG7 1078 aa21.84■■□□□ 1.09
CLN3-202ENST00000355477 RPTORQ8N122 1335 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 TTLL1O95922 423 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 ERCC3P19447 782 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 GRB14Q14449 540 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 MAP3K21Q5TCX8 1036 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 UBE2Q1Q7Z7E8 422 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 LRRC47Q8N1G4 583 aaKnown RBP21.83■■□□□ 1.09
CLN3-202ENST00000355477 SHCBP1Q8NEM2 672 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 APBA2Q99767 749 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 FLRT1Q9NZU1 646 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 PPP1R9AQ9ULJ8 1098 aa21.83■■□□□ 1.09
CLN3-202ENST00000355477 ZNF236Q9UL36 1845 aa21.83■■□□□ 1.08
CLN3-202ENST00000355477 VWA5AO00534 786 aa21.82■■□□□ 1.08
CLN3-202ENST00000355477 TFRCP02786 760 aaKnown RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 FGRP09769 529 aa21.82■■□□□ 1.08
CLN3-202ENST00000355477 PRKAR2AP13861 404 aaKnown RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 ZKSCAN1P17029 563 aaPredicted RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 CACNB2Q08289 660 aaPredicted RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 PRPF38BQ5VTL8 546 aaKnown RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 TRMT44Q8IYL2 757 aaKnown RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 CRISPLD2Q9H0B8 497 aa21.82■■□□□ 1.08
CLN3-202ENST00000355477 HMX1Q9NP08 348 aaPredicted RBP21.82■■□□□ 1.08
CLN3-202ENST00000355477 IL17RBQ9NRM6 502 aa21.82■■□□□ 1.08
CLN3-202ENST00000355477 IVNS1ABPQ9Y6Y0 642 aa21.82■■□□□ 1.08
CLN3-202ENST00000355477 NMT2O60551 498 aa21.81■■□□□ 1.08
CLN3-202ENST00000355477 CWC27Q6UX04 472 aaKnown RBP21.81■■□□□ 1.08
CLN3-202ENST00000355477 NCAPG2Q86XI2 1143 aa21.81■■□□□ 1.08
CLN3-202ENST00000355477 REPS2Q8NFH8 660 aa21.81■■□□□ 1.08
CLN3-202ENST00000355477 NPLOC4Q8TAT6 608 aa21.81■■□□□ 1.08
CLN3-202ENST00000355477 PLXNA1Q9UIW2 1896 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 TSPY2A6NKD2 308 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 STRNO43815 780 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 ORC4O43929 436 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 RANBP6O60518 1105 aaKnown RBP21.8■■□□□ 1.08
CLN3-202ENST00000355477 HOXC6P09630 235 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 GMCL1P1Q8NEA9 526 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 SLF1Q9BQI6 1058 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 NBPF3Q9H094 633 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 MROH8Q9H579 483 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 ZNF214Q9UL59 606 aaPredicted RBP21.8■■□□□ 1.08
CLN3-202ENST00000355477 SYNPO2Q9UMS6 1093 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 ZMYM6O95789 1325 aa21.8■■□□□ 1.08
CLN3-202ENST00000355477 LAMA4Q16363 1823 aa21.79■■□□□ 1.08
CLN3-202ENST00000355477 GSPT1P15170 499 aaKnown RBP21.79■■□□□ 1.08
CLN3-202ENST00000355477 ADORA2AP29274 412 aa21.79■■□□□ 1.08
CLN3-202ENST00000355477 CCND3P30281 292 aaPredicted RBP21.79■■□□□ 1.08
CLN3-202ENST00000355477 HAND2P61296 217 aa21.79■■□□□ 1.08
CLN3-202ENST00000355477 DIAPH3Q9NSV4 1193 aa21.79■■□□□ 1.08
CLN3-202ENST00000355477 FRMPD3Q5JV73 1810 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 COBLO75128 1261 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 FARP2O94887 1054 aaPredicted RBP21.78■■□□□ 1.08
CLN3-202ENST00000355477 STAT3P40763 770 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 MFAP1P55081 439 aaKnown RBP21.78■■□□□ 1.08
CLN3-202ENST00000355477 SLFN13Q68D06 897 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 DPP9Q86TI2 863 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 RIOX2Q8IUF8 465 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 CHMP4CQ96CF2 233 aa21.78■■□□□ 1.08
CLN3-202ENST00000355477 ALPK3Q96L96 1907 aa21.77■■□□□ 1.08
CLN3-202ENST00000355477 SLC25A27O95847 323 aa21.77■■□□□ 1.08
CLN3-202ENST00000355477 IGHA2P01877 340 aa21.77■■□□□ 1.08
CLN3-202ENST00000355477 RRP12Q5JTH9 1297 aaKnown RBP21.77■■□□□ 1.08
CLN3-202ENST00000355477 TTC22Q5TAA0 569 aa21.77■■□□□ 1.08
CLN3-202ENST00000355477 PRPF38AQ8NAV1 312 aaKnown RBP21.77■■□□□ 1.08
CLN3-202ENST00000355477 STX8Q9UNK0 236 aa21.77■■□□□ 1.08
CLN3-202ENST00000355477 HIP1O00291 1037 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 CYP2C19P33261 490 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 NOVP48745 357 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 TBC1D10CQ8IV04 446 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 KIFC2Q96AC6 838 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 TOMM22Q9NS69 142 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 FEM1BQ9UK73 627 aa21.76■■□□□ 1.07
CLN3-202ENST00000355477 SMCHD1A6NHR9 2005 aa21.75■■□□□ 1.07
CLN3-202ENST00000355477 FCER1AP12319 257 aa21.75■■□□□ 1.07
CLN3-202ENST00000355477 BMP3P12645 472 aa21.75■■□□□ 1.07
CLN3-202ENST00000355477 CAPN2P17655 700 aa21.75■■□□□ 1.07
CLN3-202ENST00000355477 MFSD14CQ5VZR4 134 aa21.75■■□□□ 1.07
CLN3-202ENST00000355477 ABRAQ8N0Z2 381 aa21.75■■□□□ 1.07
CLN3-202ENST00000355477 DIS3LQ8TF46 1054 aaKnown RBP21.75■■□□□ 1.07
CLN3-202ENST00000355477 IL25Q9H293 177 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms