RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CLIP2Q9UDT6 1046 aa11.55□□□□□ -0.56
SYNE1-203ENST00000354674 PLIN4Q96Q06 1357 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 TNKSO95271 1327 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 RANBP6O60518 1105 aaKnown RBP11.54□□□□□ -0.56
SYNE1-203ENST00000354674 PHACTR2O75167 634 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 BRD1O95696 1058 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 NOVP48745 357 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 SH3BP5LQ7L8J4 393 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 ENAHQ8N8S7 591 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-203ENST00000354674 SLC24A3Q9HC58 644 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 ZNF70Q9UC06 446 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-203ENST00000354674 GREB1LQ9C091 1923 aaPredicted RBP11.54□□□□□ -0.56
SYNE1-203ENST00000354674 SLU7O95391 586 aaKnown RBP11.54□□□□□ -0.56
SYNE1-203ENST00000354674 CTDNEP1O95476 244 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 STK3Q13188 491 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 WTAPQ15007 396 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 IQCA1Q86XH1 822 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 MYOZ2Q9NPC6 264 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 SWAP70Q9UH65 585 aa11.54□□□□□ -0.56
SYNE1-203ENST00000354674 GMPSP49915 693 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-203ENST00000354674 CACNB3P54284 484 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 BIRC2Q13490 618 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SLC4A8Q2Y0W8 1093 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SLC44A5Q8NCS7 719 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 ZKSCAN3Q9BRR0 538 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 UBAC1Q9BSL1 405 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 IL17RBQ9NRM6 502 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SMC3Q9UQE7 1217 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 CNTNAP1P78357 1384 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 DDTLA6NHG4 134 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SCP2P22307 547 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 FAM47AQ5JRC9 791 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 RCSD1Q6JBY9 416 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 TMCO3Q6UWJ1 677 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 NSUN7Q8NE18 718 aaKnown RBP11.53□□□□□ -0.56
SYNE1-203ENST00000354674 MKNK2Q9HBH9 465 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SERPINB13Q9UIV8 391 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SHTN1A0MZ66 631 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 ERICH2A1L162 156 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 WNT10BO00744 389 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SKILP12757 684 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 GJB2P29033 226 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 MNAT1P51948 309 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 TFAP4Q01664 338 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 GPS2Q13227 327 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 CCDC178Q5BJE1 867 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 FERMT3Q86UX7 667 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 DGKHQ86XP1 1220 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 GPC2Q8N158 579 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 NEDD1Q8NHV4 660 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 SGSM3Q96HU1 749 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 FAM217BQ9NTX9 383 aaPredicted RBP11.53□□□□□ -0.56
SYNE1-203ENST00000354674 PGAP2Q9UHJ9 254 aa11.53□□□□□ -0.56
SYNE1-203ENST00000354674 GOLGA8BA8MQT2 603 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 HLA-DOAP06340 250 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 ATP2B1P20020 1258 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 ZSWIM4Q9H7M6 989 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 PI4KBQ9UBF8 816 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 CCDC69A6NI79 296 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 TSPY2A6NKD2 308 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 SHMT1P34896 483 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 ANO6Q4KMQ2 910 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 TTC19Q6DKK2 380 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-203ENST00000354674 FAM83AQ86UY5 434 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 ZNF444Q8N0Y2 327 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-203ENST00000354674 FAM151AQ8WW52 585 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 CALR3Q96L12 384 aaKnown RBP11.52□□□□□ -0.57
SYNE1-203ENST00000354674 DNAJC18Q9H819 358 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 NCOA5Q9HCD5 579 aaKnown RBP11.52□□□□□ -0.57
SYNE1-203ENST00000354674 SLC12A7Q9Y666 1083 aa11.52□□□□□ -0.57
SYNE1-203ENST00000354674 IGKV6D-41A0A0C4DH26 115 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 ZBTB43O43298 467 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 MAP2K2P36507 400 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TPM4P67936 248 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 CCT2P78371 535 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 DNM1Q05193 864 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 SEMA3FQ13275 785 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 FOXP4Q8IVH2 680 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 MICALL2Q8IY33 904 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 MICALL1Q8N3F8 863 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 ERO1AQ96HE7 468 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 CWC15Q9P013 229 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 NMT2O60551 498 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TCP10Q12799 353 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 NBPF9Q3BBW0 867 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TATDN1Q6P1N9 297 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 NFXL1Q6ZNB6 911 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 ZNF654Q8IZM8 581 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TMOD2Q9NZR1 351 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 CNOT7Q9UIV1 285 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 MYH8P13535 1937 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 EIF3CLB5ME19 914 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TULP1O00294 542 aaPredicted RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 JAK2O60674 1132 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 SASH3O75995 380 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TSPY3P0CV98 308 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 TSPY8P0CW00 308 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 METAP2P50579 478 aaKnown RBP eCLIP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 PPP2R5BQ15173 497 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms