RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ERO1AQ96HE7 468 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 BAG1Q99933 345 aaPredicted RBP24.74■■□□□ 1.55
SHMT1-202ENST00000352886 SH3GLB2Q9NR46 395 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 NOL12Q9UGY1 213 aaKnown RBP eCLIP24.74■■□□□ 1.55
SHMT1-202ENST00000352886 MAD2L2Q9UI95 211 aa24.74■■□□□ 1.55
SHMT1-202ENST00000352886 V9GYY5 206 aaPredicted RBP24.74■■□□□ 1.55
SHMT1-202ENST00000352886 CDK5RAP2Q96SN8 1893 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 UBAP1LF5GYI3 381 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 ADKP55263 362 aaKnown RBP24.73■■□□□ 1.55
SHMT1-202ENST00000352886 FCHSD1Q86WN1 690 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 ZNF444Q8N0Y2 327 aaPredicted RBP24.73■■□□□ 1.55
SHMT1-202ENST00000352886 TC2NQ8N9U0 490 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 PCDHA4Q9UN74 947 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 MTMR7Q9Y216 660 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 A0A1B0GTH6 734 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 ETF1P62495 437 aaKnown RBP24.73■■□□□ 1.55
SHMT1-202ENST00000352886 MAPKAPK5Q8IW41 473 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 RASGRP4Q8TDF6 673 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 L2HGDHQ9H9P8 463 aa24.73■■□□□ 1.55
SHMT1-202ENST00000352886 SAP30BPQ9UHR5 308 aaKnown RBP24.73■■□□□ 1.55
SHMT1-202ENST00000352886 GPSM2P81274 684 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 PRR5LQ6MZQ0 368 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 TYW1BQ6NUM6 668 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 RPGRQ92834 1020 aaKnown RBP24.72■■□□□ 1.55
SHMT1-202ENST00000352886 BLZF1Q9H2G9 400 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 CGNQ9P2M7 1197 aaKnown RBP24.72■■□□□ 1.55
SHMT1-202ENST00000352886 PPP1R3GB7ZBB8 358 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 LDHCP07864 332 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 CCDC178Q5BJE1 867 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 PDXDC2PQ6P474 469 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 REXO1L1PQ8IX06 675 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 RTFDC1Q9BY42 306 aaPredicted RBP24.72■■□□□ 1.55
SHMT1-202ENST00000352886 STX8Q9UNK0 236 aa24.72■■□□□ 1.55
SHMT1-202ENST00000352886 GNAQP50148 359 aa24.71■■□□□ 1.55
SHMT1-202ENST00000352886 ARL6IP4Q66PJ3 421 aaKnown RBP24.71■■□□□ 1.55
SHMT1-202ENST00000352886 TCP11L1Q9NUJ3 509 aa24.71■■□□□ 1.55
SHMT1-202ENST00000352886 C15orf52Q6ZUT6 534 aaKnown RBP24.71■■□□□ 1.55
SHMT1-202ENST00000352886 APTXQ7Z2E3 356 aaKnown RBP24.71■■□□□ 1.55
SHMT1-202ENST00000352886 PYM1Q9BRP8 204 aaKnown RBP24.71■■□□□ 1.55
SHMT1-202ENST00000352886 DNAI1Q9UI46 699 aa24.71■■□□□ 1.55
SHMT1-202ENST00000352886 ZSCAN12O43309 604 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 STX10O60499 249 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 SLC35G1Q2M3R5 365 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 C4orf32Q8N8J7 132 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 PPP2R2CQ9Y2T4 447 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 TEX33O43247 280 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 CYTH3O43739 400 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 UFL1O94874 794 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 TRIM65Q6PJ69 517 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 MTRQ99707 1265 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 CD209Q9NNX6 404 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 PRDM4Q9UKN5 801 aa24.7■■□□□ 1.54
SHMT1-202ENST00000352886 RASA1P20936 1047 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 BTDP43251 543 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 CDKAL1Q5VV42 579 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 WWC2Q6AWC2 1192 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 TMEM47Q9BQJ4 181 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 LRRC4BQ9NT99 713 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 PHLPP2Q6ZVD8 1323 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.69■■□□□ 1.54
SHMT1-202ENST00000352886 CCDC194A0A1B0GVG4 234 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 M0R2N6 131 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 CDC25AP30304 524 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 LONP1P36776 959 aaKnown RBP24.69■■□□□ 1.54
SHMT1-202ENST00000352886 CBX1P83916 185 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 CCDC93Q567U6 631 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 HEATR3Q7Z4Q2 680 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 CTNND2Q9UQB3 1225 aa24.69■■□□□ 1.54
SHMT1-202ENST00000352886 ELF2Q15723 593 aa24.68■■□□□ 1.54
SHMT1-202ENST00000352886 SPDYE4A6NLX3 237 aa24.67■■□□□ 1.54
SHMT1-202ENST00000352886 GTPBP6O43824 516 aaPredicted RBP24.67■■□□□ 1.54
SHMT1-202ENST00000352886 PCDHA6Q9UN73 950 aa24.67■■□□□ 1.54
SHMT1-202ENST00000352886 PCDHA8Q9Y5H6 950 aa24.67■■□□□ 1.54
SHMT1-202ENST00000352886 TXLNAP40222 546 aa24.67■■□□□ 1.54
SHMT1-202ENST00000352886 CCDC148Q8NFR7 591 aa24.67■■□□□ 1.54
SHMT1-202ENST00000352886 ADD3Q9UEY8 706 aaKnown RBP24.67■■□□□ 1.54
SHMT1-202ENST00000352886 PALM3A6NDB9 673 aaPredicted RBP24.66■■□□□ 1.54
SHMT1-202ENST00000352886 GOLGA8HP0CJ92 632 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 ZNF287Q9HBT7 754 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 BARHL2Q9NY43 387 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 CRY2Q49AN0 593 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 RRAGBQ5VZM2 374 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 TOGARAM2Q6ZUX3 1019 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 CERKQ8TCT0 537 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 CTAGE1Q96RT6 745 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 GGA1Q9UJY5 639 aa24.66■■□□□ 1.54
SHMT1-202ENST00000352886 DDX60LQ5H9U9 1706 aaKnown RBP24.66■■□□□ 1.54
SHMT1-202ENST00000352886 STXBP3O00186 592 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 COBLO75128 1261 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 ADRA2BP18089 450 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 ATP2B4P23634 1241 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 KARSQ15046 597 aaKnown RBP24.65■■□□□ 1.54
SHMT1-202ENST00000352886 RASGRP2Q7LDG7 609 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 TEX11Q8IYF3 940 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.65■■□□□ 1.54
SHMT1-202ENST00000352886 SNED1Q8TER0 1413 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 GPR75-ASB3A0A0A6YYF3 556 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 AKR1B15C9JRZ8 316 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-202ENST00000352886 FANCGO15287 622 aa24.65■■□□□ 1.54
SHMT1-202ENST00000352886 IL1R1P14778 569 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms