RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 AMOTL1Q8IY63 956 aa25.12■■□□□ 1.61
UPF3A-201ENST00000351487 ZNF397Q8NF99 534 aaPredicted RBP25.12■■□□□ 1.61
UPF3A-201ENST00000351487 FAM205AQ6ZU69 1335 aa25.11■■□□□ 1.61
UPF3A-201ENST00000351487 M0R2N6 131 aa25.11■■□□□ 1.61
UPF3A-201ENST00000351487 RFC4P35249 363 aa25.11■■□□□ 1.61
UPF3A-201ENST00000351487 C4orf32Q8N8J7 132 aa25.11■■□□□ 1.61
UPF3A-201ENST00000351487 DYNLL2Q96FJ2 89 aa25.11■■□□□ 1.61
UPF3A-201ENST00000351487 LONP1P36776 959 aaKnown RBP25.1■■□□□ 1.61
UPF3A-201ENST00000351487 NFIXQ14938 502 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 KLHL10Q6JEL2 608 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 CTAGE1Q96RT6 745 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 ADD3Q9UEY8 706 aaKnown RBP25.1■■□□□ 1.61
UPF3A-201ENST00000351487 DNAI1Q9UI46 699 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 MAD2L2Q9UI95 211 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 GTPBP6O43824 516 aaPredicted RBP25.1■■□□□ 1.61
UPF3A-201ENST00000351487 PBX1P40424 430 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 SLC4A8Q2Y0W8 1093 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 CERS3Q8IU89 383 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 FAM177A1Q8N128 213 aaPredicted RBP25.1■■□□□ 1.61
UPF3A-201ENST00000351487 STAG2Q8N3U4 1231 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 CNBD1Q8NA66 436 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 DAGLBQ8NCG7 672 aa25.1■■□□□ 1.61
UPF3A-201ENST00000351487 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP25.1■■□□□ 1.612e-6■■■■□ 23
UPF3A-201ENST00000351487 LDHCP07864 332 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 DIXDC1Q155Q3 683 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 ELF2Q15723 593 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 TRAPPC3LQ5T215 181 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 BCL11BQ9C0K0 894 aaPredicted RBP25.09■■□□□ 1.61
UPF3A-201ENST00000351487 MKNK2Q9HBH9 465 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 ADKP55263 362 aaKnown RBP25.09■■□□□ 1.61
UPF3A-201ENST00000351487 GRIK5Q16478 980 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 GALNT17Q6IS24 598 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 SLC51AQ86UW1 340 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 GPKOWQ92917 476 aaPredicted RBP eCLIP25.09■■□□□ 1.61
UPF3A-201ENST00000351487 PANX2Q96RD6 677 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 MTRQ99707 1265 aa25.09■■□□□ 1.61
UPF3A-201ENST00000351487 TSPY3P0CV98 308 aa25.08■■□□□ 1.61
UPF3A-201ENST00000351487 TSPY8P0CW00 308 aa25.08■■□□□ 1.61
UPF3A-201ENST00000351487 CBX1P83916 185 aa25.08■■□□□ 1.61
UPF3A-201ENST00000351487 SMYD4Q8IYR2 804 aaPredicted RBP25.08■■□□□ 1.61
UPF3A-201ENST00000351487 CCDC148Q8NFR7 591 aa25.08■■□□□ 1.61
UPF3A-201ENST00000351487 NOL12Q9UGY1 213 aaKnown RBP eCLIP25.08■■□□□ 1.61
UPF3A-201ENST00000351487 V9GYY5 206 aaPredicted RBP25.08■■□□□ 1.61
UPF3A-201ENST00000351487 FANCGO15287 622 aa25.08■■□□□ 1.6
UPF3A-201ENST00000351487 STX17P56962 302 aa25.08■■□□□ 1.6
UPF3A-201ENST00000351487 TYW1BQ6NUM6 668 aa25.08■■□□□ 1.6
UPF3A-201ENST00000351487 RTFDC1Q9BY42 306 aaPredicted RBP25.08■■□□□ 1.6
UPF3A-201ENST00000351487 USP17L3A6NCW0 530 aa25.07■■□□□ 1.6
UPF3A-201ENST00000351487 USP17L4A6NCW7 530 aa25.07■■□□□ 1.6
UPF3A-201ENST00000351487 TEX33O43247 280 aa25.07■■□□□ 1.6
UPF3A-201ENST00000351487 SLC35G1Q2M3R5 365 aa25.07■■□□□ 1.6
UPF3A-201ENST00000351487 USP17L1Q7RTZ2 530 aa25.07■■□□□ 1.6
UPF3A-201ENST00000351487 SRRTQ9BXP5 876 aaKnown RBP25.07■■□□□ 1.6
UPF3A-201ENST00000351487 OGFRQ9NZT2 677 aa25.07■■□□□ 1.6
UPF3A-201ENST00000351487 AKR1B15C9JRZ8 316 aaPredicted RBP25.06■■□□□ 1.6
UPF3A-201ENST00000351487 TXLNAP40222 546 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 KMT5BQ4FZB7 885 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 TGFBRAP1Q8WUH2 860 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 DDX41Q9UJV9 622 aaKnown RBP25.06■■□□□ 1.6
UPF3A-201ENST00000351487 SNED1Q8TER0 1413 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 CYTH3O43739 400 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 ZNF444Q8N0Y2 327 aaPredicted RBP25.06■■□□□ 1.6
UPF3A-201ENST00000351487 STAMQ92783 540 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 RMND1Q9NWS8 449 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 CTNND2Q9UQB3 1225 aa25.06■■□□□ 1.6
UPF3A-201ENST00000351487 MYH1P12882 1939 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 PALM3A6NDB9 673 aaPredicted RBP25.05■■□□□ 1.6
UPF3A-201ENST00000351487 RASA1P20936 1047 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 WWC2Q6AWC2 1192 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 TOGARAM2Q6ZUX3 1019 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 CERKQ8TCT0 537 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 LZTS2Q9BRK4 669 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 BLZF1Q9H2G9 400 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 BARHL2Q9NY43 387 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 RWDD2AQ9UIY3 292 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 ITIH6Q6UXX5 1313 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 UBR3Q6ZT12 1888 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 CCDC194A0A1B0GVG4 234 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 FILIP1LQ4L180 1135 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 FBXO38Q6PIJ6 1188 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 SLC44A5Q8NCS7 719 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 NAA15Q9BXJ9 866 aaKnown RBP25.05■■□□□ 1.6
UPF3A-201ENST00000351487 ZNF287Q9HBT7 754 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 USP21Q9UK80 565 aa25.05■■□□□ 1.6
UPF3A-201ENST00000351487 SPDYE4A6NLX3 237 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 ADRA2BP18089 450 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 FAM182BQ5T319 152 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 ZNF658Q5TYW1 1059 aaPredicted RBP25.04■■□□□ 1.6
UPF3A-201ENST00000351487 IGSF22Q8N9C0 903 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 TMEM47Q9BQJ4 181 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 PCDHA6Q9UN73 950 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 PCDHA8Q9Y5H6 950 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 PARP3Q9Y6F1 533 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 STXBP3O00186 592 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 CRY2Q49AN0 593 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 PRR5LQ6MZQ0 368 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 FAM196AQ6ZSG2 479 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 LRRN4CLQ8ND94 238 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 RASGRP4Q8TDF6 673 aa25.04■■□□□ 1.6
UPF3A-201ENST00000351487 LIMA1Q9UHB6 759 aaKnown RBP25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms