RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CRELD2Q6UXH1 353 aaPredicted RBP9.12□□□□□ -0.95
ATG4A-201ENST00000343524 CYP26C1Q6V0L0 522 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 CCNI2Q6ZMN8 369 aaPredicted RBP9.12□□□□□ -0.95
ATG4A-201ENST00000343524 AENQ8WTP8 325 aaKnown RBP9.12□□□□□ -0.95
ATG4A-201ENST00000343524 KLRG1Q96E93 195 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 TCEANC2Q96MN5 208 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 OSBPL9Q96SU4 736 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 HAUS4Q9H6D7 363 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 IQSEC3Q9UPP2 1182 aaPredicted RBP9.12□□□□□ -0.95
ATG4A-201ENST00000343524 HPSEQ9Y251 543 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 SAMM50Q9Y512 469 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 SAR1BQ9Y6B6 198 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 AKAP12Q02952 1782 aa9.12□□□□□ -0.95
ATG4A-201ENST00000343524 LUC7L3O95232 432 aaKnown RBP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 FAM107AO95990 144 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 ERCC5P28715 1186 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 TNFRSF8P28908 595 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 INHBEP58166 350 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 NR1I3Q14994 352 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 ANO1Q5XXA6 986 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 CDCA2Q69YH5 1023 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 RAD9BQ6WBX8 426 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 DHX32Q7L7V1 743 aaKnown RBP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 ZNF473Q8WTR7 871 aaKnown RBP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 FAM227BQ96M60 508 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 AGXT2Q9BYV1 514 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 NFE2L3Q9Y4A8 694 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 A0A0D9SFI3 127 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 AHCYL1O43865 530 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 MYBL2P10244 700 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 SPECC1Q5M775 1068 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 SULT6B1Q6IMI4 303 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 LMOD2Q6P5Q4 547 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 FUKQ8N0W3 1084 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 CAGE1Q8TC20 777 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 C8orf76Q96K31 380 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 IRX2Q9BZI1 471 aaPredicted RBP9.11□□□□□ -0.95
ATG4A-201ENST00000343524 AXIN2Q9Y2T1 843 aa9.11□□□□□ -0.95
ATG4A-201ENST00000343524 MRC1P22897 1456 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 TECPR2O15040 1411 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 KDRP35968 1356 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 FMN2Q9NZ56 1722 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 TAF5LO75529 589 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 SETSIPP0DME0 302 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 LSP1P33241 339 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 PIP4K2AP48426 406 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-201ENST00000343524 RPS6KA3P51812 740 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 SLC39A14Q15043 492 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 PAPD7Q5XG87 772 aaKnown RBP9.1□□□□□ -0.95
ATG4A-201ENST00000343524 KANK3Q6NY19 840 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 ZNF662Q6ZS27 426 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 TTLL7Q6ZT98 887 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 AACSQ86V21 672 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 HS6ST3Q8IZP7 471 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 MICAL1Q8TDZ2 1067 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 CAVIN3Q969G5 261 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 SPDL1Q96EA4 605 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 SCLT1Q96NL6 688 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 ANKRD27Q96NW4 1050 aa9.1□□□□□ -0.95
ATG4A-201ENST00000343524 MOV10L1Q9BXT6 1211 aaKnown RBP9.1□□□□□ -0.95
ATG4A-201ENST00000343524 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.1□□□□□ -0.95
ATG4A-201ENST00000343524 UBN2Q6ZU65 1347 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 WDR17Q8IZU2 1322 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 ERICH2A1L162 156 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 BUB1BO60566 1050 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 DNAJC8O75937 253 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 GHRP10912 638 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 YBX3P16989 372 aaKnown RBP eCLIP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 PLCD1P51178 756 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 PDCLQ13371 301 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 XRCC4Q13426 336 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 MTF1Q14872 753 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 PTGISQ16647 500 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 WASHC4Q2M389 1173 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 SLC5A9Q2M3M2 681 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 MSL1Q68DK7 614 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 NCAPH2Q6IBW4 605 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 CAPRIN2Q6IMN6 1127 aaKnown RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 WAPLQ7Z5K2 1190 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 NLRP14Q86W24 1093 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 MFN1Q8IWA4 741 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 FBXL16Q8N461 479 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 OR8K1Q8NGG5 319 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 RIN2Q8WYP3 895 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 SPAG5Q96R06 1193 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 CLIC4Q9Y696 253 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 LAMA4Q16363 1823 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 WDR90Q96KV7 1748 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 MROH7-TTC4A0A0A0MT08 1334 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 ZMYM6O95789 1325 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 HMGB1P1B2RPK0 211 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 CTDNEP1O95476 244 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 FESP07332 822 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 LACTB2Q53H82 288 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 NT5DC1Q5TFE4 455 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 RESP18Q5W5W9 173 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 PPP4R3AQ6IN85 833 aa9.09□□□□□ -0.95
ATG4A-201ENST00000343524 FAM43BQ6ZT52 329 aaPredicted RBP9.09□□□□□ -0.95
ATG4A-201ENST00000343524 SND1Q7KZF4 910 aaKnown RBP eCLIP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms