RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 PLEKHG3A1L390 1219 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 USP27XA6NNY8 438 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 EPB41P11171 864 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 AP1ARQ63HQ0 302 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ARHGAP24Q8N264 748 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 SYMPKQ92797 1274 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 TRAPPC10P48553 1259 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF589Q86UQ0 364 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF579Q8NAF0 562 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 DNAI2Q9GZS0 605 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ODF2LQ9ULJ1 636 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 BZW2Q9Y6E2 419 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 PCDH11XQ9BZA7 1347 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 PCDH11YQ9BZA8 1340 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 TARSL2A2RTX5 802 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 BCRP11274 1271 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 AKNAD1Q5T1N1 836 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 SFMBT2Q5VUG0 894 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 SAMD1Q6SPF0 538 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 WHAMMQ8TF30 809 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 AK8Q96MA6 479 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 FERMT1Q9BQL6 677 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ZNF532Q9HCE3 1301 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ITGA6P23229 1130 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ST5P78524 1137 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ZKSCAN8Q15776 578 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 CERS3Q8IU89 383 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ZSCAN29Q8IWY8 852 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 RNF26Q9BY78 433 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 NHEJ1Q9H9Q4 299 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 MBD4O95243 580 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 RAPGEF1Q13905 1077 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 NCAPH2Q6IBW4 605 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 KIFAP3Q92845 792 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 RUNDC3BQ96NL0 473 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 LZTS2Q9BRK4 669 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ATG3Q9NT62 314 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 TYW1Q9NV66 732 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 NCKAP5LQ9HCH0 1330 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 NCAPD2Q15021 1401 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 DTNBO60941 627 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 TADA3O75528 432 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ERCC3P19447 782 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 COPB1P53618 953 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 IQCB1Q15051 598 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 KRT71Q3SY84 523 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 IL17REQ8NFR9 667 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 GOLPH3LQ9H4A5 285 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 DENND2AQ9ULE3 1009 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 IGSF1Q8N6C5 1336 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 CCDC169A6NNP5 214 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 CHUKO15111 745 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 GTPBP6O43824 516 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 HIP1RO75146 1068 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ZBTB16Q05516 673 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 GRIPAP1Q4V328 841 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 HS2ST1Q7LGA3 356 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 LGR6Q9HBX8 967 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 ENC1O14682 589 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 KCTD16Q68DU8 428 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 GALNT17Q6IS24 598 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 NYAP1Q6ZVC0 841 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 PEX26Q7Z412 305 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 GBP7Q8N8V2 638 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 HNRNPLLQ8WVV9 542 aaKnown RBP5.3□□□□□ -1.56
CSMD3-203ENST00000343508 VPS54Q9P1Q0 977 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 KLHL14Q9P2G3 628 aa5.3□□□□□ -1.56
CSMD3-203ENST00000343508 SPDYE3A6NKU9 549 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 SMIM23A6NLE4 172 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CUL1Q13616 776 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 WDR66Q8TBY9 1149 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 MAIP1Q8WWC4 291 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 VAT1LQ9HCJ6 419 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 AMFRQ9UKV5 643 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 IFT172Q9UG01 1749 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ATP10DQ9P241 1426 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TRAF5O00463 557 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 MXRA7P84157 204 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 IFT88Q13099 833 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 LETM2Q2VYF4 491 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 MIGA1Q8NAN2 632 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CUEDC2Q9H467 287 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CNOT10Q9H9A5 744 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 NDUFB9Q9Y6M9 179 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 V9GY48 417 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 BTBD18B2RXH4 712 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 HMGB2P26583 209 aaKnown RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 ARID5BQ14865 1188 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 HAUS3Q68CZ6 603 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 OTUD7BQ6GQQ9 843 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TOGARAM2Q6ZUX3 1019 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TUBGCP2Q9BSJ2 902 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 IRX4P78413 519 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CCZ1BP86790 482 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 CCZ1P86791 482 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-203ENST00000343508 GUCY2DQ02846 1103 aa5.29□□□□□ -1.56
CSMD3-203ENST00000343508 TCP11X2Q5H9J9 407 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms