RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 ARL6IP4Q66PJ3 421 aaKnown RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 SPTY2D1Q68D10 685 aaPredicted RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 PDXDC2PQ6P474 469 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 SMIM5Q71RC9 77 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 TXNRD3Q86VQ6 643 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 DZIP1Q86YF9 867 aaKnown RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 SMYD4Q8IYR2 804 aaPredicted RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 MCM9Q9NXL9 1143 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 FAM53CQ9NYF3 392 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 SRP68Q9UHB9 627 aaKnown RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 MKRN1Q9UHC7 482 aaKnown RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 ROBO3Q96MS0 1386 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 BRWD3Q6RI45 1802 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 IGSF3O75054 1194 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 URI1O94763 535 aaPredicted RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 VEGFAP15692 232 aaPredicted RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 TPTE2Q6XPS3 522 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 DGKHQ86XP1 1220 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 NAA15Q9BXJ9 866 aaKnown RBP16.51■□□□□ 0.23
TDP2-201ENST00000341060 SH3GLB2Q9NR46 395 aa16.51■□□□□ 0.23
TDP2-201ENST00000341060 LY75O60449 1722 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 NPHP1O15259 732 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 USP17L8P0C7I0 530 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 TM4SF1P30408 202 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 MCM7P33993 719 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 IL17AQ16552 155 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 KRT222Q8N1A0 295 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 IGSF22Q8N9C0 903 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 KAT14Q9H8E8 782 aa16.5■□□□□ 0.23
TDP2-201ENST00000341060 RGS17Q9UGC6 210 aaPredicted RBP16.5■□□□□ 0.23
TDP2-201ENST00000341060 EFCAB8A8MWE9 144 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 ZPR1O75312 459 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 TRIM37O94972 964 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 RXRBP28702 533 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 ARHGAP29Q52LW3 1261 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 C12orf60Q5U649 245 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 BLIDQ8IZY5 108 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 MNS1Q8NEH6 495 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 WDR24Q96S15 920 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 MTRQ99707 1265 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 ZNF446Q9NWS9 450 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 ITIH6Q6UXX5 1313 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 DDX60LQ5H9U9 1706 aaKnown RBP16.49■□□□□ 0.23
TDP2-201ENST00000341060 ADAMTS3O15072 1205 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 GTPBP6O43824 516 aaPredicted RBP16.49■□□□□ 0.23
TDP2-201ENST00000341060 TADA3O75528 432 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 LONP1P36776 959 aaKnown RBP16.49■□□□□ 0.23
TDP2-201ENST00000341060 GNG11P61952 73 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 FILIP1LQ4L180 1135 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 FAM196AQ6ZSG2 479 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 FAM177A1Q8N128 213 aaPredicted RBP16.49■□□□□ 0.23
TDP2-201ENST00000341060 PNMA1Q8ND90 353 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 UBXN4Q92575 508 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 ANKS1AQ92625 1134 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 STAMQ92783 540 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 IL17RBQ9NRM6 502 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 CTNND2Q9UQB3 1225 aa16.49■□□□□ 0.23
TDP2-201ENST00000341060 CCDC175P0C221 793 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 CASQ1P31415 396 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 TFAP4Q01664 338 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 RBL2Q08999 1139 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 PPFIBP1Q86W92 1011 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 C4orf32Q8N8J7 132 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 CCNL1Q9UK58 526 aaPredicted RBP16.48■□□□□ 0.23
TDP2-201ENST00000341060 PCDHA4Q9UN74 947 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 JAG2Q9Y219 1238 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 FAM205AQ6ZU69 1335 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 GNPATO15228 680 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 MFAP3LO75121 409 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 CLCN6P51797 869 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 MAP3K9P80192 1104 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 KIFC2Q96AC6 838 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 DESI2Q9BSY9 194 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 BLZF1Q9H2G9 400 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 RWDD2AQ9UIY3 292 aa16.48■□□□□ 0.23
TDP2-201ENST00000341060 LRRC10BA6NIK2 292 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 SOWAHDA6NJG2 315 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 M0R2N6 131 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 USP5P45974 858 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 GABPB1Q06547 395 aaPredicted RBP16.47■□□□□ 0.23
TDP2-201ENST00000341060 GRM4Q14833 912 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 MTF1Q14872 753 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 ZNF658Q5TYW1 1059 aaPredicted RBP16.47■□□□□ 0.23
TDP2-201ENST00000341060 CCDC24Q8N4L8 307 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 WDR66Q8TBY9 1149 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 CARD6Q9BX69 1037 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 MRFAP1Q9Y605 127 aa16.47■□□□□ 0.23
TDP2-201ENST00000341060 LDHBP07195 334 aaKnown RBP16.46■□□□□ 0.23
TDP2-201ENST00000341060 TXLNAP40222 546 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 PAK1Q13153 545 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 SLC4A8Q2Y0W8 1093 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 CCDC178Q5BJE1 867 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 RRAGBQ5VZM2 374 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 POTEAQ6S8J7 498 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 CNGA4Q8IV77 575 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 STAG2Q8N3U4 1231 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 GPKOWQ92917 476 aaPredicted RBP eCLIP16.46■□□□□ 0.23
TDP2-201ENST00000341060 RMND1Q9NWS8 449 aa16.46■□□□□ 0.23
TDP2-201ENST00000341060 LIMA1Q9UHB6 759 aaKnown RBP16.46■□□□□ 0.23
TDP2-201ENST00000341060 MAD2L2Q9UI95 211 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 147.8 ms