RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 PRO3102Q9H379 93 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 A0A0G2JMZ2 1700 aa18.28■□□□□ 0.52
VAPA-201ENST00000340541 A0A1W2PPC1 479 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 SPDYE16A6NNV3 312 aaPredicted RBP18.27■□□□□ 0.52
VAPA-201ENST00000340541 ORC4O43929 436 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 CNMDO75829 334 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 CHMLP26374 656 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 TFAP4Q01664 338 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 ATP2B2Q01814 1243 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 Q3C1V9 767 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 MTMR4Q9NYA4 1195 aa18.27■□□□□ 0.52
VAPA-201ENST00000340541 RBM27Q9P2N5 1060 aaKnown RBP18.27■□□□□ 0.52
VAPA-201ENST00000340541 TSPY3P0CV98 308 aa18.26■□□□□ 0.51
VAPA-201ENST00000340541 TSPY8P0CW00 308 aa18.26■□□□□ 0.51
VAPA-201ENST00000340541 HAND2P61296 217 aa18.26■□□□□ 0.51
VAPA-201ENST00000340541 MKL1Q969V6 931 aa18.26■□□□□ 0.51
VAPA-201ENST00000340541 DSCC1Q9BVC3 393 aa18.26■□□□□ 0.51
VAPA-201ENST00000340541 PLXNB2O15031 1838 aa18.26■□□□□ 0.51
VAPA-201ENST00000340541 RAD50Q92878 1312 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 WDR46O15213 610 aaKnown RBP18.25■□□□□ 0.51
VAPA-201ENST00000340541 ERVK-9P63128 1117 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 ERVK-24P63145 666 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 COG2Q14746 738 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 MAP3K21Q5TCX8 1036 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 TBC1D10CQ8IV04 446 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 PAWRQ96IZ0 340 aaKnown RBP18.25■□□□□ 0.51
VAPA-201ENST00000340541 CCDC136Q96JN2 1154 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 TANGO6Q9C0B7 1094 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 GOPCQ9HD26 462 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 IL17RBQ9NRM6 502 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 BTBD7Q9P203 1132 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 CLIP2Q9UDT6 1046 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 RABGAP1Q9Y3P9 1069 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 TRIOBPQ9H2D6 2365 aa18.25■□□□□ 0.51
VAPA-201ENST00000340541 CCAR1Q8IX12 1150 aaKnown RBP18.24■□□□□ 0.51
VAPA-201ENST00000340541 USP6NLQ92738 828 aa18.24■□□□□ 0.51
VAPA-201ENST00000340541 PAGR1Q9BTK6 254 aa18.24■□□□□ 0.51
VAPA-201ENST00000340541 PORCNQ9H237 461 aa18.24■□□□□ 0.51
VAPA-201ENST00000340541 SYNPO2Q9UMS6 1093 aa18.24■□□□□ 0.51
VAPA-201ENST00000340541 F5H6K3 240 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 NMT2O60551 498 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 TTLL1O95922 423 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 NDUFB10O96000 172 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 DSG3P32926 999 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 NOVP48745 357 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 KLRC3Q07444 240 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 AKNAD1Q5T1N1 836 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 STAG1Q8WVM7 1258 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 TRIB2Q92519 343 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 HOXC10Q9NYD6 342 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 OGDHLQ9ULD0 1010 aa18.23■□□□□ 0.51
VAPA-201ENST00000340541 TSPY2A6NKD2 308 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 SGSM2O43147 1006 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 RANBP6O60518 1105 aaKnown RBP18.22■□□□□ 0.51
VAPA-201ENST00000340541 FLOT1O75955 427 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 NEFLP07196 543 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 CYP2B6P20813 491 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 RGS2P41220 211 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 CCNA1P78396 465 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 MORN1Q5T089 497 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 FAM83BQ5T0W9 1011 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 PLEKHH3Q7Z736 793 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 LRRC47Q8N1G4 583 aaKnown RBP18.22■□□□□ 0.51
VAPA-201ENST00000340541 NUP88Q99567 741 aaPredicted RBP18.22■□□□□ 0.51
VAPA-201ENST00000340541 FBXO28Q9NVF7 368 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 ADAMTS5Q9UNA0 930 aa18.22■□□□□ 0.51
VAPA-201ENST00000340541 COL11A1P12107 1806 aaPredicted RBP18.21■□□□□ 0.51
VAPA-201ENST00000340541 ZNF213O14771 459 aa18.21■□□□□ 0.51
VAPA-201ENST00000340541 PCP11498 1178 aaKnown RBP18.21■□□□□ 0.51
VAPA-201ENST00000340541 GPR142Q7Z601 462 aa18.21■□□□□ 0.51
VAPA-201ENST00000340541 GMCL1P1Q8NEA9 526 aa18.21■□□□□ 0.51
VAPA-201ENST00000340541 ATG4CQ96DT6 458 aa18.21■□□□□ 0.51
VAPA-201ENST00000340541 NEDD4P46934 1319 aa18.21■□□□□ 0.51
VAPA-201ENST00000340541 CENPBP07199 599 aaPredicted RBP18.2■□□□□ 0.5
VAPA-201ENST00000340541 ZKSCAN1P17029 563 aaPredicted RBP18.2■□□□□ 0.5
VAPA-201ENST00000340541 BMP8BP34820 402 aa18.2■□□□□ 0.5
VAPA-201ENST00000340541 PTH1RQ03431 593 aa18.2■□□□□ 0.5
VAPA-201ENST00000340541 TRIM32Q13049 653 aa18.2■□□□□ 0.5
VAPA-201ENST00000340541 BMP2KLQ5H9B9 411 aa18.2■□□□□ 0.5
VAPA-201ENST00000340541 RRP12Q5JTH9 1297 aaKnown RBP18.2■□□□□ 0.5
VAPA-201ENST00000340541 MFSD6Q6ZSS7 791 aa18.2■□□□□ 0.5
VAPA-201ENST00000340541 RUFY2Q8WXA3 655 aa18.2■□□□□ 0.5
VAPA-201ENST00000340541 RANBP2P49792 3224 aaKnown RBP18.2■□□□□ 0.5
VAPA-201ENST00000340541 RAD21O60216 631 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 PRKAR2AP13861 404 aaKnown RBP18.19■□□□□ 0.5
VAPA-201ENST00000340541 MNX1P50219 401 aaPredicted RBP18.19■□□□□ 0.5
VAPA-201ENST00000340541 CACNB2Q08289 660 aaPredicted RBP18.19■□□□□ 0.5
VAPA-201ENST00000340541 DIS3LQ8TF46 1054 aaKnown RBP18.19■□□□□ 0.5
VAPA-201ENST00000340541 APBA2Q99767 749 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 RNF41Q9H4P4 317 aaPredicted RBP18.19■□□□□ 0.5
VAPA-201ENST00000340541 C11orf49Q9H6J7 331 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 TOMM22Q9NS69 142 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 TCP11L1Q9NUJ3 509 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 CTNNA3Q9UI47 895 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 PPP1R9AQ9ULJ8 1098 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 STX8Q9UNK0 236 aa18.19■□□□□ 0.5
VAPA-201ENST00000340541 SLC15A5A6NIM6 579 aa18.18■□□□□ 0.5
VAPA-201ENST00000340541 MAP2K5Q13163 448 aa18.18■□□□□ 0.5
VAPA-201ENST00000340541 IMMTQ16891 758 aaKnown RBP18.18■□□□□ 0.5
VAPA-201ENST00000340541 PPP4R3BQ5MIZ7 849 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms