RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 HEATR3Q7Z4Q2 680 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 MTMR14Q8NCE2 650 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 SH3GLB2Q9NR46 395 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 LTBP3Q9NS15 1303 aa15.39■□□□□ 0.05
HMGB1-202ENST00000339872 A0A1B0GVL5 298 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 GDF11O95390 407 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 SNW1Q13573 536 aaKnown RBP15.38■□□□□ 0.05
HMGB1-202ENST00000339872 ASPRV1Q53RT3 343 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 EARS2Q5JPH6 523 aaKnown RBP15.38■□□□□ 0.05
HMGB1-202ENST00000339872 AXDND1Q5T1B0 1012 aaPredicted RBP15.38■□□□□ 0.05
HMGB1-202ENST00000339872 WWC2Q6AWC2 1192 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 METTL16Q86W50 562 aaKnown RBP15.38■□□□□ 0.05
HMGB1-202ENST00000339872 HOMER1Q86YM7 354 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 PCDHB6Q9Y5E3 794 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 CNTNAP1P78357 1384 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 SHTN1A0MZ66 631 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 MYO1BO43795 1136 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 KINO60870 393 aaKnown RBP15.38■□□□□ 0.05
HMGB1-202ENST00000339872 SNHG28P0DPA3 235 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 CALML3P27482 149 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 CKAP2LQ8IYA6 745 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 RNF214Q8ND24 703 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 ENGASEQ8NFI3 743 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 FAM151AQ8WW52 585 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 TNFRSF25Q93038 417 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 RRP36Q96EU6 259 aaKnown RBP15.38■□□□□ 0.05
HMGB1-202ENST00000339872 UBA5Q9GZZ9 404 aa15.38■□□□□ 0.05
HMGB1-202ENST00000339872 ABCB5Q2M3G0 1257 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 NOM1Q5C9Z4 860 aaKnown RBP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 TYW1BQ6NUM6 668 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 TMEM179Q6ZVK1 233 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 CCDC148Q8NFR7 591 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 KANSL2Q9H9L4 492 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 VAT1LQ9HCJ6 419 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 MYOZ2Q9NPC6 264 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 BARHL2Q9NY43 387 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 SEC63Q9UGP8 760 aaKnown RBP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 STXBP3O00186 592 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 EEF2P13639 858 aaKnown RBP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 SMARCA1P28370 1054 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 NDUFA8P51970 172 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 SEPT2Q15019 361 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 FUCA2Q9BTY2 467 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 GPCPD1Q9NPB8 672 aa15.37■□□□□ 0.05
HMGB1-202ENST00000339872 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 HERC5Q9UII4 1024 aaKnown RBP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 NOL7Q9UMY1 257 aaKnown RBP15.37■□□□□ 0.05
HMGB1-202ENST00000339872 WNT10BO00744 389 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 ADAMTS3O15072 1205 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 RAD21O60216 631 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 ICA1Q05084 483 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 ZNF543Q08ER8 600 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 CCDC96Q2M329 555 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 NBPF9Q3BBW0 867 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 BLIDQ8IZY5 108 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 FMR1NBQ8N0W7 255 aaPredicted RBP15.36■□□□□ 0.05
HMGB1-202ENST00000339872 ZBED3Q96IU2 234 aaPredicted RBP15.36■□□□□ 0.05
HMGB1-202ENST00000339872 PIGSQ96S52 555 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 PCDHA4Q9UN74 947 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 CEP131Q9UPN4 1083 aa15.36■□□□□ 0.05
HMGB1-202ENST00000339872 CCDC192P0DO97 292 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 CMA1P23946 247 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 PRELPP51888 382 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 RBM26Q5T8P6 1007 aaKnown RBP15.35■□□□□ 0.05
HMGB1-202ENST00000339872 PIK3AP1Q6ZUJ8 805 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 CLIC6Q96NY7 704 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 RIOX1Q9H6W3 641 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 NYAP2Q9P242 653 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 TRIM75PA6NK02 468 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 CUTAO60888 179 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 PFKFB1P16118 471 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 RPS12P25398 132 aaKnown RBP15.35■□□□□ 0.05
HMGB1-202ENST00000339872 FKBP1CQ5VVH2 108 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 RBM43Q6ZSC3 357 aaKnown RBP15.35■□□□□ 0.05
HMGB1-202ENST00000339872 KRI1Q8N9T8 703 aaKnown RBP15.35■□□□□ 0.05
HMGB1-202ENST00000339872 TMEM39BQ9GZU3 492 aa15.35■□□□□ 0.05
HMGB1-202ENST00000339872 GH2P01242 217 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 NAPAP54920 295 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 SPON1Q9HCB6 807 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 GJA3Q9Y6H8 435 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 JAG1P78504 1218 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 RRP1BQ14684 758 aaKnown RBP15.34■□□□□ 0.05
HMGB1-202ENST00000339872 GPATCH4Q5T3I0 446 aaKnown RBP15.34■□□□□ 0.05
HMGB1-202ENST00000339872 SHC4Q6S5L8 630 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 KCTD1Q719H9 257 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 FAM83AQ86UY5 434 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 CDAN1Q8IWY9 1227 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 RASGRP4Q8TDF6 673 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 CCDC12Q8WUD4 166 aaPredicted RBP15.34■□□□□ 0.05
HMGB1-202ENST00000339872 MKL1Q969V6 931 aa15.34■□□□□ 0.05
HMGB1-202ENST00000339872 WNT7AO00755 349 aa15.33■□□□□ 0.05
HMGB1-202ENST00000339872 CTAGE5O15320 804 aa15.33■□□□□ 0.05
HMGB1-202ENST00000339872 GMPSP49915 693 aaPredicted RBP15.33■□□□□ 0.05
HMGB1-202ENST00000339872 TYRO3Q06418 890 aa15.33■□□□□ 0.05
HMGB1-202ENST00000339872 TTC38Q5R3I4 469 aa15.33■□□□□ 0.05
HMGB1-202ENST00000339872 TTBK2Q6IQ55 1244 aa15.33■□□□□ 0.05
HMGB1-202ENST00000339872 DAGLBQ8NCG7 672 aa15.33■□□□□ 0.05
HMGB1-202ENST00000339872 ANP32BQ92688 251 aaKnown RBP15.33■□□□□ 0.05
HMGB1-202ENST00000339872 FBXO2Q9UK22 296 aaPredicted RBP15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms