RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 GH2P01242 217 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 MMP1P03956 469 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 PDHBP11177 359 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 EEF2P13639 858 aaKnown RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 PTMSP20962 102 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 AKAP17AQ02040 695 aaKnown RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 NR5A1Q13285 461 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 RASA3Q14644 834 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 ABCB5Q2M3G0 1257 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 KIF4BQ2VIQ3 1234 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 MYSM1Q5VVJ2 828 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 DIS3L2Q8IYB7 885 aaKnown RBP4.79□□□□□ -1.64
MCF2-201ENST00000338585 TRPM4Q8TD43 1214 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 WASF1Q92558 559 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 DPF2Q92785 391 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 GPKOWQ92917 476 aaPredicted RBP eCLIP4.79□□□□□ -1.64
MCF2-201ENST00000338585 SPATA32Q96LK8 384 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 CCDC17Q96LX7 622 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 MAP3K14Q99558 947 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.79□□□□□ -1.64
MCF2-201ENST00000338585 TMEM63CQ9P1W3 806 aa4.79□□□□□ -1.64
MCF2-201ENST00000338585 FAM205CA6NFA0 338 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 DDNO94850 711 aaPredicted RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 PARP1P09874 1014 aaKnown RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 SCG2P13521 617 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 EPS15P42566 896 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 GSE1Q14687 1217 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 NPY5RQ15761 445 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 NOM1Q5C9Z4 860 aaKnown RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 FKBP1CQ5VVH2 108 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 ASTLQ6HA08 431 aaPredicted RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 TYW1BQ6NUM6 668 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 CCDC84Q86UT8 332 aaPredicted RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 FAM83AQ86UY5 434 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 PGBD1Q96JS3 809 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 VAT1LQ9HCJ6 419 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 GPCPD1Q9NPB8 672 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 GPRC5DQ9NZD1 345 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 RNF181Q9P0P0 153 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 HACL1Q9UJ83 578 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 CLIC4Q9Y696 253 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 DICER1Q9UPY3 1922 aaKnown RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 MYH4Q9Y623 1939 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 A0A1W2PRG0 241 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 RAD21O60216 631 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 SNHG28P0DPA3 235 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 U2AF2P26368 475 aaKnown RBP eCLIP4.78□□□□□ -1.64
MCF2-201ENST00000338585 SLC16A2P36021 539 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 HIRAP54198 1017 aaPredicted RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 UBE2HP62256 183 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 ICA1Q05084 483 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 GNL2Q13823 731 aaKnown RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 PFKFB3Q16875 520 aaPredicted RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 EARS2Q5JPH6 523 aaKnown RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 PRAMEF18Q5VWM3 479 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 TTBK2Q6IQ55 1244 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 TMEM179Q6ZVK1 233 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 BRAPQ7Z569 592 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 HOMER1Q86YM7 354 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 GPC2Q8N158 579 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 TEPSINQ96N21 525 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 PHF20Q9BVI0 1012 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 SCAND2PQ9GZW5 306 aaPredicted RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 KANSL2Q9H9L4 492 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 HERC5Q9UII4 1024 aaKnown RBP4.78□□□□□ -1.64
MCF2-201ENST00000338585 ELP1O95163 1332 aa4.78□□□□□ -1.64
MCF2-201ENST00000338585 MBD3O95983 291 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 LIG1P18858 919 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 ECE1P42892 770 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 GNAQP50148 359 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 ZNF543Q08ER8 600 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 CCDC96Q2M329 555 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 ANGEL2Q5VTE6 544 aaKnown RBP4.78□□□□□ -1.65
MCF2-201ENST00000338585 C9orf131Q5VYM1 1079 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 WWC2Q6AWC2 1192 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 DLK2Q6UY11 383 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 KCTD1Q719H9 257 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 HEATR3Q7Z4Q2 680 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 NOSTRINQ8IVI9 506 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 ZNF396Q96N95 335 aaPredicted RBP4.78□□□□□ -1.65
MCF2-201ENST00000338585 PIGSQ96S52 555 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 NUP88Q99567 741 aaPredicted RBP4.78□□□□□ -1.65
MCF2-201ENST00000338585 SPZ1Q9BXG8 430 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 RTEL1Q9NZ71 1219 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 NYAP2Q9P242 653 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 RCOR1Q9UKL0 485 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 CFAP45Q9UL16 551 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 ISY1Q9ULR0 285 aaKnown RBP4.78□□□□□ -1.65
MCF2-201ENST00000338585 FZD1Q9UP38 647 aa4.78□□□□□ -1.65
MCF2-201ENST00000338585 H7C1D1 291 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 WNT7AO00755 349 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 ATP2B1P20020 1258 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 TNNI2P48788 182 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 TOB1P50616 345 aaPredicted RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 SAFBQ15424 915 aaKnown RBP eCLIP4.77□□□□□ -1.65
MCF2-201ENST00000338585 ZSCAN23Q3MJ62 389 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 NBPF12Q5TAG4 269 aaPredicted RBP4.77□□□□□ -1.65
MCF2-201ENST00000338585 GAS2L3Q86XJ1 694 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 SPICE1Q8N0Z3 855 aa4.77□□□□□ -1.65
MCF2-201ENST00000338585 LINC00301Q8NCQ3 95 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms